Evidence map›Paper›PMID 39585974›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Wet-dry cycles cause nucleic acid monomers to polymerize into long chains.

Xiaowei Song, Povilas Simonis, David Deamer, Richard N Zare

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. Theory for sequence selection via phase separation and oligomerization.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xiaowei Song *Department of Chemistry, Stanford University, Stanford, CA 94305.
Povilas Simonis *Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064.
David DeamerDepartment of Biomolecular Engineering, University of California, Santa Cruz, CA 95064.ORCID 0000-0002-3904-548X
Richard N ZareDepartment of Chemistry, Stanford University, Stanford, CA 94305.ORCID 0000-0001-5266-4253

Funding

Baltic-American Freedom Foundation and Research Council of Lithuania S-PD-24-69DOD | USAF | AMC | Air Force Office of Scientific Research (AFOSR) AFOSR FA9550-21-1-0170
6 · The paper itself

Abstract

The key first step in the oligomerization of monomers is to find an initiator, which is usually done by thermolysis or photolysis. We present a markedly different approach that initiates acid-catalyzed polymerization at the surface of water films or water droplets, which is the reactive phase during a wet-dry cycle in freshwater hot springs associated with subaerial volcanic landmasses. We apply this method to the oligomerization of different nucleic acids, a topic relevant to how it might be possible to go from simple nucleic acid monomers to long-chain polymers, a key step in forming the building blocks of life. It has long been known that dehydration at elevated temperatures can drive the synthesis of ester and peptide bonds, but this reaction has typically been carried out by incubating dry monomers at elevated temperatures. We report that single or multiple cycles of wetting and drying link mononucleotides by forming phosphodiester bonds. Mass spectrometric analysis reveals uridine monophosphate oligomers up to 53 nucleotides, with an abundance of 35 and 43 nt in length. Long-chain oligomers are also observed for thymidine monophosphate, adenosine monophosphate, and deoxyadenosine monophosphate after exposure to a few wet-dry cycles. Nanopore sequencing confirms that long linear chains are formed. Enzyme digestion shows that the linkage is the phosphodiester bond, which is further confirmed by

Indexed as

Nucleic AcidsPolymerizationHot SpringsPolymersWaterNucleic AcidsPolymersWaternanopore sequencingnucleic acidsOligomerizationprebiotic chemistrywet-dry cycles

Identifiers

PMID39585974
PMCPMC11626162

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.