Evidence map›Paper›PMID 39581342›Full record

ArticleMetabolic engineering2025

Optimized production of concanamycins using a rational metabolic engineering strategy.

Filipa Pereira, Morgan McCauley, Katherine Lev, Linnea Verhey-Henke, Alanna R Condren, Ralph J Harte, Jesus Galvez, David H Sherman

Abstract read
In one paragraph

Article in Metabolic engineering, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Filipa PereiraLife Sciences Institute, University of Michigan, Ann Arbor, MI, 48109, USA. Electronic address: fpere@umich.edu.
Morgan McCauleyLife Sciences Institute, University of Michigan, Ann Arbor, MI, 48109, USA.
Katherine LevLife Sciences Institute, University of Michigan, Ann Arbor, MI, 48109, USA.
Linnea Verhey-HenkeLife Sciences Institute, University of Michigan, Ann Arbor, MI, 48109, USA.
Alanna R CondrenLife Sciences Institute, University of Michigan, Ann Arbor, MI, 48109, USA.
Ralph J HarteLife Sciences Institute, University of Michigan, Ann Arbor, MI, 48109, USA.
Jesus GalvezLife Sciences Institute, University of Michigan, Ann Arbor, MI, 48109, USA.
David H ShermanLife Sciences Institute, University of Michigan, Ann Arbor, MI, 48109, USA; Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA; Department of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA; Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, 48109, USA. Electronic address: davidhs@umich.edu.

Funding

Development of natural product inhibitors of Nef for clearance of HIV reservoirsR01AI148383 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L., SHERMAN, DAVID H · 2019 to 2023
$3.8M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
Orbitrap Fusion Lumos ETD with IRMPD for UM Chemistry MS Facility ExpansionS10OD021619 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HAKANSSON, KRISTINA · 2016 to 2016
$1.1M
NIAID NIH HHS R01 AI148383NIGMS NIH HHS T32 GM145304NIH HHS S10 OD021619
6 · The paper itself

Abstract

Plecomacrolides, such as concanamycins and bafilomycins, are potent and specific inhibitors of vacuolar-type ATPase. Concanamycins are 18-membered macrolides with promising therapeutic potential against multiple diseases, including viral infection, osteoporosis, and cancer. Due to the complexity of their total synthesis, the production of concanamycins is only achieved through microbial fermentation. However, the low titers of concanamycin A and its analogs in the native producing strains are a significant bottleneck for scale-up, robust structure-activity relationship studies, and drug development. To address this challenge, we designed a library of engineered Streptomyces strains for the overproduction of concanamycin A-C by combining the overexpression of target regulatory genes with the optimization of fermentation media. Integration of two endogenous regulators from the concanamycin biosynthetic gene cluster (cms) and one heterologous regulatory gene from the bafilomycin biosynthetic gene cluster significantly increased production of concanamycin A and its less abundant analog concanamycin B in Streptomyces eitanensis. The highest titers reported to date were observed in the engineered S. eitanensis DHS10676, which produced over 900 mg/L of concanamycin A and 300 mg/L of concanamycin B. Heterologous overexpression of the identified target regulatory genes across a panel of Streptomyces spp. harboring a putative concanamycin biosynthetic gene cluster confirmed its identity, and significantly improved concanamycin A production in all tested strains. Strain engineering, optimization of fermentation, and extraction purification protocols enabled swift access to these structurally complex plecomacrolides for semi-synthetic medicinal chemistry-based approaches. Together, this work established a platform for robust overproduction of concanamycin analogs across species.

Indexed as

MacrolidesMetabolic EngineeringStreptomycesMacrolidesConcanamycin AMetabolomicsNatural productsPlecomacrolidesProteomicsStreptomycesTranscription regulation

Identifiers

PMID39581342
PMCPMC11908387

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.