Evidence map›Paper›PMID 39580634›Full record

ArticleEpigenomics

tRNA-derived RNAs in human milk extracellular vesicles and associations with breastfeeding variables and maternal diet.

Abigail Gaylord, Elizabeth A Holzhausen, Bridget Chalifour, William B Patterson, Pei Wen Tung, Andrea A Baccarelli, Michael I Goran, Tanya L Alderete, Allison Kupsco

Abstract read
In one paragraph

Article in Epigenomics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Abigail GaylordDepartment of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, NY, USA.ORCID 0000-0002-5859-6359
Elizabeth A HolzhausenDepartment of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA.
Bridget ChalifourDepartment of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA.
William B PattersonDepartment of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USA.
Pei Wen TungDepartment of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, NY, USA.
Andrea A BaccarelliDepartment of Environmental Health, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
Michael I GoranDepartment of Pediatrics, Children's Hospital Los Angeles, Los Angeles, CA, USA.
Tanya L AldereteDepartment of Environmental Health and Engineering, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
Allison KupscoDepartment of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, NY, USA.

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Southern California Center for Chronic Health Disparities in Latino Children and Families.P50MD017344 · NIMHD · CHILDREN'S HOSPITAL OF LOS ANGELES · PI GORAN, MICHAEL ISAAC · 2021 to 2025
$27.8M
POSTDOCTORAL TRAINING IN ARTERIOSCLEROSIS RESEARCHT32HL007343 · NHLBI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HENRY N GINSBERG, Muredach P Reilly · 1985 to 2026
$12.7M
Supplemental Training in Making Data FAIR and AI/ML ReadyT32ES007322 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Pam R Factor-Litvak, Allison Kupsco · 2000 to 2026
$12.1M
Impact of Sugars and Human Milk Oligosaccharides on Infant Microbiome and ObesityR01DK110793 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GORAN, MICHAEL ISAAC, PETERSON, BRADLEY S · 2017 to 2024
$6.0M
Transdisciplinary Training in Sleep and Circadian RhythmsT32HL149646 · NHLBI · UNIVERSITY OF COLORADO · PI Kenneth P Wright · 2020 to 2026
$1.6M
Near-Roadway and Ambient Air Pollution Exposure and the Gut Microbiome: Implications for Obesity and Insulin Resistance in AdolescenceR00ES027853 · NIEHS · UNIVERSITY OF COLORADO · PI ALDERETE, TANYA LYNN · 2018 to 2020
$721k
Prenatal Exposures to Flame-Retardants: Mitochondrial Signatures and Childhood ObesityR00ES030749 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KUPSCO, ALLISON · 2021 to 2023
$639k
Exposure to Ambient Air Pollutants, Circulating microRNAs, and Hepatic Fat Fraction Among Young AdultsF31DK134198 · NIDDK · UNIVERSITY OF COLORADO · PI PATTERSON, WILLIAM BROOKS · 2022 to 2023
$80k
NCATS NIH HHS UL1 TR001873NHLBI NIH HHS T32 HL007343NHLBI NIH HHS T32 HL149646NIDDK NIH HHS F31 DK134198NIDDK NIH HHS R01 DK110793NIEHS NIH HHS R00 ES027853NIEHS NIH HHS R00 ES030749NIEHS NIH HHS T32 ES007322NIMHD NIH HHS P50 MD017344
6 · The paper itself

Abstract

aimsTo describe tDRs in human milk EVs and their associations with maternal body mass index, age, dietary indices, breastfeeding frequency, season and time of milk collection in a Latina population. MATERIALS &

methodsWe sequenced small RNAs from EVs from 109 mature human milk samples collected at 1 month after delivery in the Southern California Mother's Milk Study. We grouped tDRs using hierarchical clustering and clusters were compared across tDR characteristics. We analyzed associations of tDRs with intrinsic maternal variables (body mass index, age), maternal nutrition (caloric intake, Healthy Eating Index, Dietary Inflammatory Index), and variables related to feeding and milk collection (breastfeeding frequency, season and time of milk collection) using negative binomial models.

resultsWe identified 338 tDRs expressed in 90% or more of milk EV samples, of which 113 were identified in all samples. tDR-1:26-Gly-CCC-1-M4 accounted for most reads (79%). Pathway analysis revealed a wide array of biological processes and disease mechanisms across the four tDR clusters. tDRs were associated with season of collection, time of collection, breastfeeding frequency, and the dietary inflammatory index.

conclusionstDRs are abundant in milk EVs and may be sensitive to maternal diet, seasonality, time of day, and breastfeeding frequency.

Indexed as

Breast FeedingExtracellular VesiclesMilk, HumanRNA, TransferAdultBody Mass IndexDietFemaleHumansMaternal Nutritional Physiological PhenomenaYoung AdultRNA, TransferBiomarkersepigeneticshuman milknutritiontRNA

Identifiers

PMID39580634
PMCPMC11622811

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.