Evidence map›Paper›PMID 39579763›Full record

ArticleAmerican journal of human genetics2024

The methylomic landscape of human articular cartilage development contains epigenetic signatures of osteoarthritis risk.

Euan McDonnell, Sarah E Orr, Matthew J Barter, Danielle Rux, Abby Brumwell, Nicola Wrobel, Lee Murphy, Lynne M Overman, Antony K Sorial, David A Young and 2 more

Abstract read
In one paragraph

Article in American journal of human genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Mechanoepigenetics in musculoskeletal disease.Osteoarthritis and cartilage · 2026
    Review
  6. Programmed cell death in osteoarthritis.Apoptosis : an international journal on programmed cell death · 2026
    Review
  7. Review
  8. Review
  9. Review
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Euan McDonnellComputational Biology Facility, University of Liverpool, MerseyBio, Crown Street, Liverpool, UK.
Sarah E OrrBiosciences Institute, Newcastle University, Central Parkway, Newcastle upon Tyne, UK.
Matthew J BarterBiosciences Institute, Newcastle University, Central Parkway, Newcastle upon Tyne, UK.
Danielle RuxOrthopedic Surgery, UConn Health, Farmington, CT, USA.
Abby BrumwellBiosciences Institute, Newcastle University, Central Parkway, Newcastle upon Tyne, UK.
Nicola WrobelEdinburgh Clinical Research Facility, University of Edinburgh, Edinburgh, UK.
Lee MurphyEdinburgh Clinical Research Facility, University of Edinburgh, Edinburgh, UK.
Lynne M OvermanHuman Developmental Biology Resource, Newcastle University, International Centre for Life, Central Parkway, Newcastle upon Tyne, UK.
Antony K SorialBiosciences Institute, Newcastle University, Central Parkway, Newcastle upon Tyne, UK.
David A YoungBiosciences Institute, Newcastle University, Central Parkway, Newcastle upon Tyne, UK.
Jamie SoulInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK. Electronic address: jamie.soul@liverpool.ac.uk.
Sarah J RiceBiosciences Institute, Newcastle University, Central Parkway, Newcastle upon Tyne, UK. Electronic address: sarah.rice@ncl.ac.uk.

Funding

Roles of the superficial zone in mature articular cartilageR00AR078352 · NIAMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Danielle Renae Rux · 2024 to 2026
$722k
Roles of the superficial zone in mature articular cartilageK99AR078352 · NIAMS · CHILDREN'S HOSP OF PHILADELPHIA · PI RUX, DANIELLE RENAE · 2022 to 2023
$180k
NIAMS NIH HHS K99 AR078352NIAMS NIH HHS R00 AR078352
6 · The paper itself

Abstract

Increasing evidence is emerging to link age-associated complex musculoskeletal diseases, including osteoarthritis (OA), to developmental factors. Multiple studies have shown a functional role for DNA methylation in the genetic mechanisms of OA risk using articular cartilage samples taken from aged individuals, yet knowledge of temporal changes to the methylome during human cartilage development is limited. We quantified DNA methylation at ∼700,000 individual CpGs across the epigenome of developing human chondrocytes in 72 samples ranging from 7 to 21 post-conception weeks. We identified significant changes in 3% of all CpGs and >8,200 developmental differentially methylated regions. We further identified 24 loci at which OA genetic variants colocalize with methylation quantitative trait loci. Through integrating developmental and mature human chondrocyte datasets, we find evidence for functional effects exerted solely in development or throughout the life course. This will have profound impacts on future approaches to translating genetic pathways for therapeutic intervention.

Indexed as

Cartilage, ArticularChondrocytesDNA MethylationEpigenesis, GeneticOsteoarthritisQuantitative Trait LociAgedCpG IslandsEpigenomeFemaleGenetic Predisposition to DiseaseHumansMaleMiddle AgedRisk FactorscartilagecolocalizationdevelopmentDNA methylationepigenomejointmethylomeosteoarthritisQTLskeletal

Identifiers

PMID39579763
PMCPMC11639090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.