Evidence map›Paper›PMID 39578633›Full record

ArticleScientific reports2024

Colorimetric and electrochemical analysis of DNAzyme-LAMP amplicons for the detection of Escherichia coli in food matrices.

Alaa H Sewid, Haley C Dylewski, Joseph H Ramos, Bailey M Morgan, Benti D Gelalcha, Doris H D'Souza, Jie Jayne Wu, Oudessa Kerro Dego, Shigetoshi Eda

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Strategic Detection ofBiosensors · 2025
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alaa H Sewid *School of Natural Resources, The University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
Haley C Dylewski *School of Natural Resources, The University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
Joseph H RamosSchool of Natural Resources, The University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
Bailey M MorganDepartment of Microbiology, The University of Tennessee, Knoxville, TN, USA.
Benti D GelalchaDepartments of Animal Science, The University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
Doris H D'SouzaDepartments of Food Science, The University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
Jie Jayne WuDepartment of Electrical Engineering and Computer Science, The University of Tennessee, Knoxville, TN, USA.
Oudessa Kerro DegoDepartments of Animal Science, The University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
Shigetoshi EdaSchool of Natural Resources, The University of Tennessee Institute of Agriculture, Knoxville, TN, USA. seda@utk.edu.

Funding

NSF 2023-67021-40613
6 · The paper itself

Abstract

Foodborne bacteria like Escherichia coli threaten global food security, necessitating affordable, on-site detection methods, especially in resource-limited settings. This study optimized loop-mediated isothermal amplification (LAMP) integrated with peroxidase-mimicking G-quadruplex DNA structures (DNAzyme), termed DNAzyme-LAMP which was designed to incorporate two different catalytic DNAzymes per amplification unit, enabling colorimetric detection of E. coli in leafy vegetables and milk samples. Additionally, we introduce a novel electrochemical method that enhances analytical sensitivity. The optimized DNAzyme-LAMP achieved a detection limit below 6.3 CFU per reaction or 0.1 aM gene copies. This system lays the groundwork for the development of on-site biosensors and can be adapted for detecting other foodborne pathogens.

Indexed as

ColorimetryDNA, CatalyticElectrochemical TechniquesEscherichia coliFood MicrobiologyNucleic Acid Amplification TechniquesAnimalsBiosensing TechniquesG-QuadruplexesLimit of DetectionMilkMolecular Diagnostic TechniquesVegetablesDNA, CatalyticE. coliElectrochemical sensingFood safetyG-quadruplex DNAzymeLoop mediated isothermal amplification (LAMP)Magnetic beads

Identifiers

PMID39578633
PMCPMC11584896

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.