Evidence map›Paper›PMID 39578573›Full record

ArticleNature neuroscience2024

Predicting modular functions and neural coding of behavior from a synaptic wiring diagram.

Ashwin Vishwanathan, Alex Sood, Jingpeng Wu, Alexandro D Ramirez, Runzhe Yang, Nico Kemnitz, Dodam Ih, Nicholas Turner, Kisuk Lee, Ignacio Tartavull and 9 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Ashwin VishwanathanPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA. vishwanathan.ashwin@gmail.com.
Alex Sood *Center for Neuroscience, University of California, Davis, Davis, CA, USA.
Jingpeng Wu *Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Alexandro D Ramirez *Institute for Computational Biomedicine and the Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA.
Runzhe YangPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Nico KemnitzPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Dodam IhPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Nicholas TurnerPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Kisuk LeePrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Ignacio TartavullPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
William M SilversmithPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Chris S JordanPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Celia DavidPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Doug BlandPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Amy SterlingPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
H Sebastian SeungPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Mark S GoldmanCenter for Neuroscience, University of California, Davis, Davis, CA, USA. msgoldman@ucdavis.edu.
Emre R F AksayInstitute for Computational Biomedicine and the Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA. ema2004@med.cornell.edu.
Eyewirers

Funding

P5: Mechanistic Multi-Region Brain ModelsU19NS132720 · NINDS · PRINCETON UNIVERSITY · PI Carlos D Brody, Ila R. Fiete · 2023 to 2026
$21.5M
Subcortical Neural Coding and DynamicsU19NS104648 · NINDS · PRINCETON UNIVERSITY · PI SEUNG, HYUNJUNE SEBASTIAN · 2017 to 2021
$15.3M
Circuit Mechanisms Underlying Persistent Activity in a Neural IntegratorR01EY027036 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Emre R Aksay, MARK S GOLDMAN · 2016 to 2026
$6.4M
Circuit Mechanisms Underlying Learned Changes in Persistent Neural ActivityR01NS104926 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI AKSAY, EMRE R, GOLDMAN, MARK S · 2018 to 2022
$4.1M
The computational importance of cerebellar processingR01EY021581 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI AKSAY, EMRE R · 2012 to 2016
$2.8M
Understanding the Role of a Novel Cell Type in Triggering Voluntary SaccadesR00EY027017 · NEI · SUNY DOWNSTATE MEDICAL CENTER · PI RAMIREZ, ALEXANDRO D · 2023 to 2025
$733k
Retinal connectome: mobile game and crowdsourcing algorithms for EyeWire IIUH2CA203710 · NCI · PRINCETON UNIVERSITY · PI SEUNG, HYUNJUNE SEBASTIAN · 2016 to 2017
$642k
Understanding the Role of a Novel Cell Type in Triggering Voluntary SaccadesK99EY027017 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI RAMIREZ, ALEXANDRO D · 2017 to 2018
$186k
NCI NIH HHS UH2 CA203710NEI NIH HHS K99 EY027017NEI NIH HHS R00 EY027017NEI NIH HHS R01 EY021581NEI NIH HHS R01 EY027036NINDS NIH HHS R01 NS104926NINDS NIH HHS U19 NS104648NINDS NIH HHS U19 NS132720U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY021581U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY027017U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY027036U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) NS104682U.S. Department of Health & Human Services | NIH | NCI | Division of Cancer Epidemiology and Genetics, National Cancer Institute (National Cancer Institute Division of Cancer Epidemiology and Genetics) CA203710
6 · The paper itself

Abstract

A long-standing goal in neuroscience is to understand how a circuit's form influences its function. Here, we reconstruct and analyze a synaptic wiring diagram of the larval zebrafish brainstem to predict key functional properties and validate them through comparison with physiological data. We identify modules of strongly connected neurons that turn out to be specialized for different behavioral functions, the control of eye and body movements. The eye movement module is further organized into two three-block cycles that support the positive feedback long hypothesized to underlie low-dimensional attractor dynamics in oculomotor control. We construct a neural network model based directly on the reconstructed wiring diagram that makes predictions for the cellular-resolution coding of eye position and neural dynamics. These predictions are verified statistically with calcium imaging-based neural activity recordings. This work demonstrates how connectome-based brain modeling can reveal previously unknown anatomical structure in a neural circuit and provide insights linking network form to function.

Indexed as

ZebrafishAnimalsBehavior, AnimalBrain StemConnectomeEye MovementsLarvaModels, NeurologicalNerve NetNeural Networks, ComputerNeural PathwaysNeuronsSynapses

Identifiers

PMID39578573
PMCPMC11614741

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.