ArticleScientific data2024
Gap-free telomere-to-telomere haplotype assembly of the tomato hind (Cephalopholis sonnerati).
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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8 citing papers in PubMed.
- A Complete Telomere-To-Telomere Assembly ofEvolutionary applications · 2026Article
- Gap-free telomere-to-telomere genome assembly of stone flounder (Kareius bicoloratus).Scientific data · 2026Article
- Integrative Transcriptome Analysis and WGCNA Uncover the Growth Regulatory Mechanisms inAnimals : an open access journal from MDPI · 2026Article
- Embryonic Development and Growth Performance of the Tomato Hind Grouper (Animals : an open access journal from MDPI · 2025Article
- T2T Genomes Unveil Centromere Architecture and Adaptive Divergence in Large Yellow Croaker (Larimichthys crocea).Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- Gap-free telomere-to-telomere genome assembly of marbled flounder (Pseudopleuronectes yokohamae).Scientific data · 2025Article
- Chromosome-level genome assembly of the coral grouper, Epinephelus corallicola and its evolutionary insights into Eupercaria.BMC genomics · 2025Article
- Gap-free telomere-to-telomere haplotype assembly of the tomato hind (Cephalopholis sonnerati).Scientific data · 2024Article
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8 authors.
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Abstract
The tomato hind (Cephalopholis sonnerati) is an emerging economically important grouper in recent years. With the increasing maturity of sequencing technologies and assembly methodologies, a higher quality reference genome has become both accessible and necessary. In this study, we present two telomere-to-telomere (T2T) gap-free haplotype assemblies of the tomato hind with lengths of 1039.53 Mb (YSFRI_Csonn_HA_1.0, N50 43.83 Mb) and 1039.91 Mb (YSFRI_Csonn_HB_1.0, N50 44.09 Mb). Reads from next-generation sequencing, ONT ultra-long sequencing, and PacBio HiFi sequencing exhibited mapping rates exceeding 99.8% when aligned to these two assemblies. Evaluation using Merqury indicated high accuracy for both assemblies, with average quality values of 51.80 and 51.83, respectively. Percentages of 97.9% and 97.8% of complete BUSCOs were achieved, and a total of 23,270 and 23,184 protein-code genes were inferred in each assembly. Moreover, telomere identification, centromere prediction, and repetitive sequence annotation were also successfully performed. These two assemblies provide robust foundation for the genetic analysis and development of molecular genetic breeding technologies in C. sonnerati.
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