Evidence map›Paper›PMID 39578461›Full record

ArticleNature communications2024

An inhibitory segment within G-patch activators tunes Prp43-ATPase activity during ribosome assembly.

Daniela Portugal-Calisto, Alexander Gregor Geiger, Julius Rabl, Oscar Vadas, Michaela Oborská-Oplová, Jarosław Mazur, Federica Richina, Purnima Klingauf-Nerurkar, Erich Michel, Alexander Leitner and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Daniela Portugal-CalistoInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.
Alexander Gregor GeigerInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-1372-1929
Julius RablCryo-EM Knowledge Hub, ETH Zurich, Zurich, Switzerland.
Oscar VadasFaculty of Medicine, University of Geneva, Geneva, Switzerland.ORCID 0000-0003-3511-6479
Michaela Oborská-OplováInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-0976-4341
Jarosław MazurInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-1677-011X
Federica RichinaInstitute of Biochemistry, ETH Zurich, Zurich, Switzerland.
Purnima Klingauf-NerurkarInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.
Erich MichelDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-5252-5429
Alexander LeitnerInstitute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.ORCID 0000-0003-4126-0725
Daniel BoehringerCryo-EM Knowledge Hub, ETH Zurich, Zurich, Switzerland.ORCID 0000-0002-6666-8447
Vikram Govind PanseInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland. vpanse@imm.uzh.ch.ORCID 0000-0002-4770-7068

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mechanisms by which G-patch activators tune the processive multi-tasking ATP-dependent RNA helicase Prp43 (DHX15 in humans) to productively remodel diverse RNA:protein complexes remain elusive. Here, a comparative study between a herein and previously characterized activators, Tma23 and Pxr1, respectively, defines segments that organize Prp43 function during ribosome assembly. In addition to the activating G-patch, we discover an inhibitory segment within Tma23 and Pxr1, I-patch, that restrains Prp43 ATPase activity. Cryo-electron microscopy and hydrogen-deuterium exchange mass spectrometry show how I-patch binds to the catalytic RecA-like domains to allosterically inhibit Prp43 ATPase activity. Tma23 and Pxr1 contain dimerization segments that organize Prp43 into higher-order complexes. We posit that Prp43 function at discrete locations on pre-ribosomal RNA is coordinated through toggling interactions with G-patch and I-patch segments. This could guarantee measured and timely Prp43 activation, enabling precise control over multiple RNA remodelling events occurring concurrently during ribosome formation.

Indexed as

Cryoelectron MicroscopyDEAD-box RNA HelicasesRibosomesAdenosine TriphosphatasesProtein BindingRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesDEAD-box RNA HelicasesPRP43 protein, S cerevisiaeRNA, RibosomalSaccharomyces cerevisiae Proteins

Identifiers

PMID39578461
PMCPMC11584650

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.