Evidence map›Paper›PMID 39577870›Full record

ArticleJournal for immunotherapy of cancer2024

Human blood cell transcriptomics unveils dynamic systemic immune modulation along colorectal cancer progression.

Amaia Martinez-Usatorre, Laura Ciarloni, Paolo Angelino, Victoria Wosika, Alessandra Jordano Conforte, Sara S Fonseca Costa, Eric Durandau, Sylvain Monnier-Benoit, Hector Fabio Satizabal, Jérémie Despraz and 7 more

Abstract read
In one paragraph

Article in Journal for immunotherapy of cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Amaia Martinez-Usatorre *Novigenix SA, Epalinges, Switzerland.ORCID 0000-0002-3416-1529
Laura Ciarloni *Novigenix SA, Epalinges, Switzerland.
Paolo AngelinoUniversity of Lausanne, Lausanne, Switzerland.
Victoria WosikaNovigenix SA, Epalinges, Switzerland.
Alessandra Jordano ConforteNovigenix SA, Epalinges, Switzerland.
Sara S Fonseca CostaNovigenix SA, Epalinges, Switzerland.
Eric DurandauNovigenix SA, Epalinges, Switzerland.
Sylvain Monnier-BenoitNovigenix SA, Epalinges, Switzerland.
Hector Fabio SatizabalInstitute of Information and Communication Technologies, HEIG-VD, Yverdon-les-Bains, Switzerland.
Jérémie DesprazInstitute of Information and Communication Technologies, HEIG-VD, Yverdon-les-Bains, Switzerland.
Andres Perez-UribeInstitute of Information and Communication Technologies, HEIG-VD, Yverdon-les-Bains, Switzerland.
Mauro DelorenziUniversity of Lausanne, Lausanne, Switzerland.
Stephan MorgenthalerInstitute of Mathematics, EPFL, Lausanne, Switzerland.
Brian HashemiNovigenix SA, Epalinges, Switzerland.
Noushin HadadiNovigenix SA, Epalinges, Switzerland.
Sahar Hosseinian-EhrensbergerNovigenix SA, Epalinges, Switzerland.
Pedro J RomeroNovigenix SA, Epalinges, Switzerland Pedro.romero@novigenix.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundColorectal cancer (CRC) is the second leading cause of cancer-related deaths worldwide. CRC deaths can be reduced with prevention and early diagnosis. Circulating tumor DNA-based liquid biopsies, are emerging tools for cancer detection. However, the tumor-signal-dependent nature of this approach results in low sensitivity in precancerous and early CRC stages. Here we propose the host immune response to the onset of cancer as an alternative approach for early detection of CRC.

methodsWe perform whole transcriptome analysis of peripheral blood mononuclear cells (PBMCs) isolated from individuals with CRC, precancerous lesions or negative colonoscopy in two independent cohorts using next-generation sequencing.

resultsWe discover and validate novel early CRC RNA biomarkers. Taking into account, and adjusting for, the sensitivity of PBMCs transcriptomes to processing times, we report distinct transcriptomic changes in the periphery related to specific CRC stages. Activation of innate immunity is already detectable in the peripheral blood of individuals with pre-malignant advanced adenomas. This immune response is followed by signs of transient B-cell activation and sustained inhibition of T-cell responses along CRC progression, whereby at late stages, protumoral myeloid cells, wound healing and coagulation processes prevail. Moreover, some biomarkers show similar dysregulation in tumors and are implicated in known pathways of CRC pathophysiology.

conclusionsThe strong systemic immune modulation triggered during CRC progression leads to previously unnoticed alterations detectable in PBMCs, paving the way for the development of an early CRC screening blood test, incorporating 226 validated biomarkers identified through immunotranscriptomics.

Indexed as

Colorectal NeoplasmsDisease ProgressionTranscriptomeAgedBiomarkers, TumorFemaleGene Expression ProfilingHumansLeukocytes, MononuclearMaleMiddle AgedBiomarkers, TumorB cellBiomarkerColorectal CancerNeutrophilNext generation sequencing - NGS

Identifiers

PMID39577870
PMCPMC11590809

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.