Evidence map›Paper›PMID 39576677›Full record

ArticleeLife2024

Automated workflow for the cell cycle analysis of (non-)adherent cells using a machine learning approach.

Kourosh Hayatigolkhatmi, Chiara Soriani, Emanuel Soda, Elena Ceccacci, Oualid El Menna, Sebastiano Peri, Ivan Negrelli, Giacomo Bertolini, Gian Martino Franchi, Roberta Carbone and 2 more

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kourosh Hayatigolkhatmi *Department of Experimental Oncology, European Institute of Oncology-IRCCS, Milan, Italy.ORCID https://orcid.org/0000-0002-9910-9756
Chiara Soriani *Department of Experimental Oncology, European Institute of Oncology-IRCCS, Milan, Italy.ORCID https://orcid.org/0000-0003-4363-6597
Emanuel Soda *Department of Experimental Oncology, European Institute of Oncology-IRCCS, Milan, Italy.
Elena CeccacciDepartment of Experimental Oncology, European Institute of Oncology-IRCCS, Milan, Italy.
Oualid El MennaDepartment of Experimental Oncology, European Institute of Oncology-IRCCS, Milan, Italy.
Sebastiano PeriDepartment of Experimental Oncology, European Institute of Oncology-IRCCS, Milan, Italy.
Ivan NegrelliTethis S.p.A., Milan, Italy.
Giacomo BertoliniTethis S.p.A., Milan, Italy.
Gian Martino FranchiTethis S.p.A., Milan, Italy.
Roberta CarboneTethis S.p.A., Milan, Italy.
Saverio MinucciDepartment of Experimental Oncology, European Institute of Oncology-IRCCS, Milan, Italy.
Simona RodighieroDepartment of Experimental Oncology, European Institute of Oncology-IRCCS, Milan, Italy.ORCID https://orcid.org/0000-0003-4236-7823

Funding

Fondazione AIRC per la ricerca sul cancro ETS 28467Fondazione AIRC per la ricerca sul cancro ETS IG20Marie Skłodowska-Curie Innovative Training Network 10.3030/813327
6 · The paper itself

Abstract

Understanding the cell cycle at the single-cell level is crucial for cellular biology and cancer research. While current methods using fluorescent markers have improved the study of adherent cells, non-adherent cells remain challenging. In this study, we addressed this gap by combining a specialized surface to enhance cell attachment, the FUCCI(CA)2 sensor, an automated image analysis pipeline, and a custom machine learning algorithm. This approach enabled precise measurement of cell cycle phase durations in non-adherent cells. This method was validated in acute myeloid leukemia cell lines NB4 and Kasumi-1, which have unique cell cycle characteristics, and we tested the impact of cell cycle-modulating drugs on NB4 cells. Our cell cycle analysis system, which is also compatible with adherent cells, is fully automated and freely available, providing detailed insights from hundreds of cells under various conditions. This report presents a valuable tool for advancing cancer research and drug development by enabling comprehensive, automated cell cycle analysis in both adherent and non-adherent cells.

Indexed as

Cell AdhesionCell CycleMachine LearningAutomationCell Line, TumorHumansImage Processing, Computer-AssistedLeukemia, Myeloid, AcuteWorkflowAMLcancer biologycell biologycell cyclecell trackinghumanlive-cell imagingmachine learningnon-adherent cells

Identifiers

PMID39576677
PMCPMC11584176

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.