Evidence map›Paper›PMID 39576602›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

A Method for Characterizing Protein-Histone Peptide Interactions In Vitro.

Claire Jourdain, Bernadette Eichstädt, Daniel Schubert

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Claire JourdainInstitute for Biology, Freie Universität Berlin, Berlin, Germany.
Bernadette EichstädtInstitute for Biology, Freie Universität Berlin, Berlin, Germany.
Daniel SchubertInstitute for Biology, Freie Universität Berlin, Berlin, Germany. Dan.Schubert@fu-berlin.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone posttranslational modifications (PTMs) contribute to transcriptional regulation and generate in combination a "histone code," which is largely conserved among organismal kingdoms. By binding to specific PTMs, histone reader proteins act as molecular interpreters of the histone code. These proteins play a crucial role in gene regulation and chromatin structure by recruiting other proteins to the chromatin or blocking histone-modifying enzymes from accessing chromatin. Revealing the specificity of histone readers is, therefore, fundamental to understanding their function in gene regulation. Here, we describe a protocol to identify the binding specificity of histone readers to PTMs using histone peptide arrays and in vitro pull-down assays.

Indexed as

HistonesPeptidesProtein BindingProtein Processing, Post-TranslationalChromatinHistone CodeHumansChromatinHistonesPeptidesGST protein purificationHistone modificationsHistone peptide arrayHistone readersPTMsPull-down assay

Identifiers

PMID39576602

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.