Evidence map›Paper›PMID 39576177›Full record

ArticleDevelopment (Cambridge, England)2024

A new cell culture resource for investigations of reptilian gene function.

Sukhada P Samudra, Sungdae Park, Elizabeth A Esser, Tryggvi P McDonald, Arianna M Borges, Jonathan Eggenschwiler, Douglas B Menke

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Cold Spring Harbor protocols · 2026
    Article
  3. Pre-oviposition development of the brown anole (Anolis sagrei).Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Article
  4. Oogenesis and germinal bed morphology of the brown anole (A. sagrei).Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Article
  5. Oogenesis and germinal bed morphology of the brown anole (bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sukhada P SamudraDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0002-7006-8970
Sungdae ParkDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0002-2544-7066
Elizabeth A EsserDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.ORCID 0009-0006-0293-137X
Tryggvi P McDonaldDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0001-7517-752X
Arianna M BorgesDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.ORCID 0009-0006-2064-7663
Jonathan EggenschwilerDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0001-6444-8865
Douglas B MenkeDepartment of Genetics, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0002-7109-1451

Funding

Collaborative Research: EDGE FGT: DEVELOPMENT OF FUNCTIONAL GENETIC TOOLS IN GECKOSR01HG013006 · NHGRI · MARQUETTE UNIVERSITY · PI GAMBLE, ANTHONY B, MENKE, DOUGLAS BAY · 2023 to 2025
$1.1M
National Science Foundation 1827647NHGRI NIH HHS R01 HG013006NIH HHS R01HG013006University of Georgia
6 · The paper itself

Abstract

The establishment of CRISPR/Cas9 gene editing in Anolis sagrei has positioned this species as a powerful model for studies of reptilian gene function. To enhance this model, we developed an immortalized lizard fibroblast cell line (ASEC-1) for the exploration of reptilian gene function in cellular processes. We demonstrate the use of this cell line by scrutinizing the role of primary cilia in lizard Hedgehog (Hh) signaling. Using CRISPR/Cas9 mutagenesis, we disrupted the ift88 gene, which is required for ciliogenesis in diverse organisms. We determined that loss of itf88 from lizard cells leads to an absence of primary cilia, a partial derepression of gli1 transcription, and an inability of the cells to respond to the Smoothened agonist, SAG. Through a cross-species analysis of SAG-induced transcriptional responses in cultured limb bud cells, we further determined that ∼46% of genes induced as a response to Hh pathway activation in A. sagrei are also SAG responsive in Mus musculus limb bud cells. Our results highlight conserved and diverged aspects of Hh signaling in anoles and establish a new resource for investigations of reptilian gene function.

Indexed as

CiliaHedgehog ProteinsLizardsSignal TransductionAnimalsCell Culture TechniquesCell LineCRISPR-Cas SystemsFibroblastsGene EditingLimb BudsMiceZinc Finger Protein GLI1Hedgehog ProteinsZinc Finger Protein GLI1AnolisCell lineCRISPRHedgehogLizard

Identifiers

PMID39576177
PMCPMC11607698

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.