Evidence map›Paper›PMID 39574636›Full record

ArticlebioRxiv : the preprint server for biology2024

Convolutional neural network models describe the encoding subspace of local circuits in auditory cortex.

Jereme C Wingert, Satyabrata Parida, Sam Norman-Haignere, Stephen V David

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Jereme C WingertBehavioral and Systems Neuroscience Graduate Program, Oregon Health and Science University, Portland, OR 97239, USA.
Satyabrata ParidaOregon Hearing Research Center, Oregon Health and Science University, Portland, OR 97239, USA.
Sam Norman-HaignereBiostatistics and Computational Biology, University of Rochester, Rochester, NY 14642, USA.
Stephen V DavidOregon Hearing Research Center, Oregon Health and Science University, Portland, OR 97239, USA.

Funding

Top-down control of auditory processing in the cortico-collicular network (Administrative Supplement)R01DC014950 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, STEPHEN V · 2016 to 2025
$3.5M
Tools for modeling state-dependent sensory encoding by neural populations across spatial and temporal scalesR01EB028155 · NIBIB · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, STEPHEN V, MESGARANI, NIMA · 2019 to 2023
$1.2M
Dynamic neural coding of spectro-temporal sound features during free movementR21DC021048 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, STEPHEN V · 2023 to 2024
$415k
NIBIB NIH HHS R01 EB028155NIDCD NIH HHS R01 DC014950NIDCD NIH HHS R21 DC021048
6 · The paper itself

Abstract

Auditory cortex encodes information about nonlinear combinations of spectro-temporal sound features. Convolutional neural networks (CNNs) provide an architecture for generalizable encoding models that can predict time-varying neural activity evoked by natural sounds with substantially greater accuracy than established models. However, the complexity of CNNs makes it difficult to discern the computational properties that support their improved performance. To address this limitation, we developed a method to visualize the tuning subspace captured by a CNN. Single-unit data was recorded using high channel-count microelectrode arrays from primary auditory cortex (A1) of awake, passively listening ferrets during presentation of a large natural sound set. A CNN was fit to the data, replicating approaches from previous work. To measure the tuning subspace, the dynamic spectrotemporal receptive field (dSTRF) was measured as the locally linear filter approximating the input-output relationship of the CNN at each stimulus timepoint. Principal component analysis was then used to reduce this very large set of filters to a smaller subspace, typically requiring 2-10 filters to account for 90% of dSTRF variance. The stimulus was projected into the subspace for each neuron, and a new model was fit using only the projected values. The subspace model was able to predict time-varying spike rate nearly as accurately as the full CNN. Sensory responses could be plotted in the subspace, providing a compact model visualization. This analysis revealed a diversity of nonlinear responses, consistent with contrast gain control and emergent invariance to spectrotemporal modulation phase. Within local populations, neurons formed a sparse representation by tiling the tuning subspace. Narrow spiking, putative inhibitory neurons showed distinct patterns of tuning that may reflect their position in the cortical circuit. These results demonstrate a conceptual link between CNN and subspace models and establish a framework for interpretation of deep learning-based models.

Identifiers

PMID39574636
PMCPMC11581007

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.