Evidence map›Paper›PMID 39574004›Full record

ArticleBMC plant biology2024

Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides.

Thi Nhien Tran, Alessandra Lanubile, Adriano Marocco, Mario Enrico Pè, Matteo Dell'Acqua, Mara Miculan

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Identification ofPlant-environment interactions (Hoboken, N.J.) · 2025
    Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Thi Nhien Tran *Center of Plant Sciences, Scuola Superiore Sant'Anna, Pisa, 56127, Italy.ORCID http://orcid.org/0009-0005-6726-2368
Alessandra Lanubile *Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Piacenza, 29122, Italy.ORCID http://orcid.org/0000-0002-1868-4469
Adriano MaroccoDepartment of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Piacenza, 29122, Italy.ORCID http://orcid.org/0000-0001-5378-5591
Mario Enrico PèCenter of Plant Sciences, Scuola Superiore Sant'Anna, Pisa, 56127, Italy.ORCID http://orcid.org/0000-0002-4961-6231
Matteo Dell'AcquaCenter of Plant Sciences, Scuola Superiore Sant'Anna, Pisa, 56127, Italy.ORCID http://orcid.org/0000-0001-5703-8382
Mara MiculanCenter of Plant Sciences, Scuola Superiore Sant'Anna, Pisa, 56127, Italy. mara.miculan@kaust.edu.sa.ORCID http://orcid.org/0000-0002-9884-5727

Funding

Scuola Superiore Sant'Anna International Doctoral Program
6 · The paper itself

Abstract

backgroundThe cultivation of maize (Zea mays L.), one of the most important crops worldwide for food, feed, biofuels, and industrial applications, faces significant constraints due to Fusarium verticillioides, a fungus responsible for severe diseases including seedling blights, stalk rot, and ear rot. Its impact is worsened by the fact that chemical and agronomic measures used to control the infection are often inefficient. Hence, genetic resistance is considered the most reliable resource to reduce the damage. This study aims to elucidate the genetic basis of F. verticillioides resistance in maize.

resultsYoung seedlings of eight divergent maize lines, founders of the MAGIC population, were artificially inoculated with a F. verticillioides strain. Phenotypic analysis and transcriptome sequencing of both control and treated samples identified several hundred differentially expressed genes enriched in metabolic processes associated with terpene synthesis. A WGCNA further refined the pool of genes with potential implications in disease response and found a limited set of hub genes, encoding bZIP and MYB transcription factors, or involved in carbohydrate metabolism, solute transport processes, calcium signaling, and lipid pathways. Finally, additional gene resources were provided by combining transcriptomic data with previous QTL mapping, thereby shedding light on the molecular mechanisms in the maize-F. verticillioides interaction.

conclusionsThe transcriptome profiling of eight divergent MAGIC maize founder lines with contrasting levels of Fusarium verticillioides resistance combined with phenotypic analysis, clarifies the molecular mechanisms underlying the maize-F. verticillioides interaction.

Indexed as

Disease ResistanceFusariumGene Expression ProfilingPlant DiseasesZea maysGene Expression Regulation, PlantGenes, PlantTranscriptomeFusarium verticillioidesMAGIC populationRNA sequencingRolled Towel AssayWGCNAZea mays

Identifiers

PMID39574004
PMCPMC11580207

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.