Evidence map›Paper›PMID 39572562›Full record

ArticleNature communications2024

An evolutionarily conserved metabolite inhibits biofilm formation in Escherichia coli K-12.

Jingzhe Guo, Wilhelmina T Van De Ven, Aleksandra Skirycz, Venkatesh P Thirumalaikumar, Liping Zeng, Quanqing Zhang, Gerd Ulrich Balcke, Alain Tissier, Katayoon Dehesh

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Metabolite control of enzyme activity links stress to biosynthetic regulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jingzhe GuoInstitute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, USA.ORCID 0000-0003-0858-527X
Wilhelmina T Van De VenInstitute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, USA.
Aleksandra SkiryczBoyce Thompson Institute, Ithaca, NY, USA.
Venkatesh P ThirumalaikumarBoyce Thompson Institute, Ithaca, NY, USA.
Liping ZengInstitute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, USA.
Quanqing ZhangInstitute for Integrative Genome Biology, Proteomics Core, University of California, Riverside, Riverside, CA, USA.ORCID 0000-0002-8460-181X
Gerd Ulrich BalckeLeibniz Institute of Plant Biochemistry, Department of Cell and Metabolic Biology; Weinberg 3, Halle (Saale), Germany.
Alain TissierLeibniz Institute of Plant Biochemistry, Department of Cell and Metabolic Biology; Weinberg 3, Halle (Saale), Germany.ORCID 0000-0002-9406-4245
Katayoon DeheshInstitute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, USA. kdehesh@ucr.edu.ORCID 0000-0002-9312-8032

Funding

Defining the Retrograde Plastid-to-Nucleus Stress Signaling PathwayR01GM107311 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI DEHESH, KATAYOON · 2013 to 2021
$2.5M
NIGMS NIH HHS R01 GM107311U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM107311-8
6 · The paper itself

Abstract

Methylerythritol cyclodiphosphate (MEcPP) is an intermediate in the biosynthesis of isoprenoids in plant plastids and in bacteria, and acts as a stress signal in plants. Here, we show that MEcPP regulates biofilm formation in Escherichia coli K-12 MG1655. Increased MEcPP levels, triggered by genetic manipulation or oxidative stress, inhibit biofilm development and production of fimbriae. Deletion of fimE, encoding a protein known to downregulate production of adhesive fimbriae, restores biofilm formation in cells with elevated MEcPP levels. Limited proteolysis-coupled mass spectrometry (LiP-MS) reveals that MEcPP interacts with the global regulatory protein H-NS, which is known to repress transcription of fimE. MEcPP prevents the binding of H-NS to the fimE promoter. Therefore, our results indicate that MEcPP can regulate biofilm formation by modulating H-NS activity and thus reducing fimbriae production. Further research is needed to test whether MEcPP plays similar regulatory roles in other bacteria.

Indexed as

BiofilmsEscherichia coli K12Escherichia coli ProteinsFimbriae, BacterialGene Expression Regulation, BacterialErythritolOxidative StressPromoter Regions, GeneticErythritolEscherichia coli Proteins

Identifiers

PMID39572562
PMCPMC11582573

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.