Evidence map›Paper›PMID 39572458›Full record

ArticleEnvironmental microbiology2024

Succession of Bacteria and Archaea Within the Soil Micro-Food Web Shifts Soil Respiration Dynamics.

Mandip Tamang, Johannes Sikorski, Miriam van Bommel, Marc Piecha, Tim Urich, Liliane Ruess, Katharina Huber, Meina Neumann-Schaal, Michael Pester

Abstract read
In one paragraph

Article in Environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Interactions at theMicrobiology (Reading, England) · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mandip TamangLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Johannes SikorskiLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Miriam van BommelHumboldt-Universität zu Berlin, Institute of Biology, Ecology Group, Berlin, Germany.
Marc PiechaUniversity of Greifswald, Institute of Microbiology, Greifswald, Germany.
Tim UrichUniversity of Greifswald, Institute of Microbiology, Greifswald, Germany.
Liliane RuessHumboldt-Universität zu Berlin, Institute of Biology, Ecology Group, Berlin, Germany.
Katharina HuberLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Meina Neumann-SchaalLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Michael PesterLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.ORCID https://orcid.org/0000-0001-6296-4145

Funding

German Research Foundation (SPP 2322) HU3067/1-1German Research Foundation (SPP 2322) NE2192/4-1German Research Foundation (SPP 2322) PE2147/6-1German Research Foundation (SPP 2322) RU 780/22-1German Research Foundation (SPP 2322) UR198/7-1
6 · The paper itself

Abstract

Bacterivorous nematodes are important grazers in the soil micro-food web. Their trophic regulation shapes the composition and ecosystem services of the soil microbiome, but the underlying population dynamics of bacteria and archaea are poorly understood. We followed soil respiration and 221 dominant bacterial and archaeal 16S rRNA gene amplicon sequencing variants (ASVs) in response to top-down control by a common bacterivorous soil nematode, Acrobeloides buetschlii, bottom-up control by maize litter amendment and their combination over 32 days. Maize litter amendment significantly increased soil respiration, while A. buetschlii addition caused an earlier peak in soil respiration. Underlying bacterial and archaeal population dynamics separated into five major response types, differentiating in their temporal abundance maxima and minima. In-depth analysis of these population dynamics identified a broad imprint of A. buetschlii grazing on dominant bacterial (Acidobacteriota, Bacteroidota, Gemmatimonadota, Pseudomonadota) and archaeal (Nitrososphaerota) ASVs. Combined bottom-up control by maize litter and top-down control by A. buetschlii grazing caused a succession of soil microbiota, driven by population changes first in the Bacteroidota, then in the Pseudomonadota and finally in the Acidobacteriota and Nitrososphaerota. Our results are an essential step forward in understanding trophic modulation of soil microbiota and its feedback on soil respiration.

Indexed as

ArchaeaBacteriaFood ChainMicrobiotaRNA, Ribosomal, 16SSoilSoil MicrobiologyZea maysAnimalsNematodaRNA, Ribosomal, 16SSoilgrazingmicrobial communitynematoderespirationsoiltrophic interactions

Identifiers

PMID39572458
PMCPMC11582019

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.