Evidence map›Paper›PMID 39569448›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2025

Distributed, immutable, and transparent biomedical limited data set request management on multi-capacity network.

Yufei Yu, Maxim Edelson, Anh Pham, Jonathan E Pekar, Brian Johnson, Kai Post, Tsung-Ting Kuo

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yufei YuDivision of Biomedical Informatics, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, United States.ORCID 0000-0003-2068-5361
Maxim EdelsonDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, CA, 92093, United States.
Anh PhamDivision of Biomedical Informatics, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, United States.
Jonathan E PekarInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh, EH9 3FL, United Kingdom.
Brian JohnsonDivision of Biomedical Informatics, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, United States.ORCID 0000-0002-9477-4677
Kai PostDivision of Biomedical Informatics, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, United States.
Tsung-Ting KuoDivision of Biomedical Informatics, Department of Medicine, University of California San Diego, La Jolla, CA, 92093, United States.ORCID 0000-0002-8728-4477

Funding

San Diego Biomedical Informatics Education & Research (SABER)T15LM011271 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHAMIM NEMATI · 2012 to 2026
$9.7M
iAGREE: A Multi-Center, Networked Patient Consent StudyR01HG011066 · NHGRI · YALE UNIVERSITY · PI OHNO-MACHADO, LUCILA · 2020 to 2024
$4.2M
SOCAL: Privacy-protecting Sharing Of Clinical Data Across LaboratoriesR01EB031030 · NIBIB · YALE UNIVERSITY · PI KUO, TSUNG-TING · 2022 to 2025
$1.3M
NHGRI NIH HHS R01 HG011066NIBIB NIH HHS R01 EB031030NIHNIH HHS R01EB031030NLM NIH HHS T15 LM011271NLM NIH HHS T15LM011271San Diego Biomedical Informatics Education & ResearchU.S. National Institutes of Health R01EB031030
6 · The paper itself

Abstract

objectiveOur study aimed to expedite data sharing requests of Limited Data Sets (LDS) through the development of a streamlined platform that allows distributed, immutable management of network activities, provides transparent and intuitive auditing of data access history, and systematically evaluated it on a multi-capacity network setting for meaningful efficiency metrics. MATERIALS AND

methodsWe developed a blockchain-based system with six types of smart contracts to automate the LDS sharing process among major stakeholders. Our workflow included metadata initialization, access-request processing, and audit-log querying. We evaluated our system using synthetic data on three machines with varying specifications to emulate real-world scenarios. The data employed included ∼1000 researcher requests and ∼360 000 log queries.

resultsOn average, it took ∼2.5 s to register and respond to a researcher access request. The average runtime for an audit-log query with non-empty output was ∼3 ms. The runtime metrics at each institution showed general trends affiliated with their computational capacity. DISCUSSION: Our system can reduce the LDS sharing request time from potentially hours to seconds, while enhancing data access transparency in a multi-institutional setting. There were variations in performance across sites that could be attributed to differences in hardware specifications. The performance gains became marginal beyond certain hardware thresholds, pointing to the influence of external factors such as network speeds.

conclusionOur blockchain-based system can potentially accelerate clinical research by strengthening the data access process, expediting access and delivery of data links, increasing transparency with clear audit trails, and reinforcing trust in medical data management. Our smart contracts are available at: https://github.com/graceyufei/LDS-Request-Management.

Indexed as

BlockchainComputer Communication NetworksDatasets as TopicInformation DisseminationHumansblockchaindata protectiondata sharingprivacy and security

Identifiers

PMID39569448
PMCPMC11756586

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.