Evidence map›Paper›PMID 39569406›Full record

ArticleFrontiers in cellular and infection microbiology2024

Proteomics of circulating extracellular vesicles reveals diverse clinical presentations of COVID-19 but fails to identify viral peptides.

Melisa Gualdrón-López, Alberto Ayllon-Hermida, Núria Cortes-Serra, Patricia Resa-Infante, Joan Josep Bech-Serra, Iris Aparici-Herraiz, Marc Nicolau-Fernandez, Itziar Erkizia, Lucia Gutierrez-Chamorro, Silvia Marfil and 20 more

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Melisa Gualdrón-López *ISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Alberto Ayllon-Hermida *ISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Núria Cortes-SerraISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Patricia Resa-InfanteGermans Trias I Pujol Research Institute (IGTP), Badalona, Spain.
Joan Josep Bech-SerraJosep Carreras Leukemia Research Institute, Badalona, Spain.
Iris Aparici-HerraizISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Marc Nicolau-FernandezISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Itziar ErkiziaIrsiCaixa, Badalona, Spain.
Lucia Gutierrez-ChamorroIrsiCaixa, Badalona, Spain.
Silvia MarfilIrsiCaixa, Badalona, Spain.
Edwards PradenasIrsiCaixa, Badalona, Spain.
Carlos Ávila NietoIrsiCaixa, Badalona, Spain.
Bernat CucurullJosep Carreras Leukemia Research Institute, Badalona, Spain.
Sergio Montaner-TarbésInnovex Therapeutics S.L., Badalona, Spain.
Magdalena MuelasInternational Health Service, Hospital Clínic, Barcelona, Spain.
Ruth SotilInternational Health Service, Hospital Clínic, Barcelona, Spain.
Ester BallanaGermans Trias I Pujol Research Institute (IGTP), Badalona, Spain.
Victor UrreaIrsiCaixa, Badalona, Spain.
Lorenzo FraileAgro tecnio Center, Department of Animal Science, University of Lleida, Lleida, Spain.
Maria MontoyaCentro de Investigaciones Biológicas Margarita Salas (CIB-CSIC), Madrid, Spain.
Julia VergaraUnitat Mixta d'Investigació Institute of Agrifood Research and Technology UAB (IRTA-UAB) en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Bellaterra, Spain.
Joaquim SegalesUnitat Mixta d'Investigació Institute of Agrifood Research and Technology UAB (IRTA-UAB) en Sanitat Animal, Centre de Recerca en Sanitat Animal (CReSA), Bellaterra, Spain.
Jorge CarrilloIrsiCaixa, Badalona, Spain.
Nuria Izquierdo-UserosIrsiCaixa, Badalona, Spain.
Julià BlancoGermans Trias I Pujol Research Institute (IGTP), Badalona, Spain.
Carmen Fernandez-BecerraISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Carolina de La TorreJosep Carreras Leukemia Research Institute, Badalona, Spain.
Maria-Jesus PinazoISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Javier Martinez-PicadoGermans Trias I Pujol Research Institute (IGTP), Badalona, Spain.
Hernando A Del PortilloISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extracellular vesicles (EVs) released by virus-infected cells have the potential to encapsulate viral peptides, a characteristic that could facilitate vaccine development. Furthermore, plasma-derived EVs may elucidate pathological changes occurring in distal tissues during viral infections. We hypothesized that molecular characterization of EVs isolated from COVID-19 patients would reveal peptides suitable for vaccine development. Blood samples were collected from three cohorts: severe COVID-19 patients (G1), mild/asymptomatic cases (G2), and SARS-CoV-2-negative healthcare workers (G3). Samples were obtained at two time points: during the initial phase of the pandemic in early 2020 (m0) and eight months later (m8). Clinical data analysis revealed elevated inflammatory markers in G1. Notably, non-vaccinated individuals in G1 exhibited increased levels of neutralizing antibodies at m8, suggesting prolonged exposure to viral antigens. Proteomic profiling of EVs was performed using three distinct methods: immunocapture (targeting CD9), ganglioside-capture (utilizing Siglec-1) and size-exclusion chromatography (SEC). Contrary to our hypothesis, this analysis failed to identify viral peptides. These findings were subsequently validated through Western blot analysis targeting the RBD of the SARS-CoV-2 Spike protein's and comparative studies using samples from experimentally infected Syrian hamsters. Furthermore, analysis of the EV cargo revealed a diverse molecular profile, including components involved in the regulation of viral replication, systemic inflammation, antigen presentation, and stress responses. These findings underscore the potential significance of EVs in the pathogenesis and progression of COVID-19.

Indexed as

COVID-19Extracellular VesiclesProteomicsSARS-CoV-2AdultAnimalsAntibodies, NeutralizingAntibodies, ViralCricetinaeFemaleHumansMaleMesocricetusMiddle AgedPeptidesViral ProteinsAntibodies, NeutralizingAntibodies, ViralPeptidesViral Proteinsantibody responseCOVID-19 patientsextracellular vesiclesganglioside-capture (CD169/Siglec-1)immunocapture (CD9)proteomics profilingSARS-CoV-2size-exclusion chromatography (SEC)

Identifiers

PMID39569406
PMCPMC11576438

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.