Evidence map›Paper›PMID 39569208›Full record

ArticlePatterns (New York, N.Y.)2024

AnnoMate: Exploring and annotating integrated molecular data through custom interactive visualizations.

Claudia Chu, Conor Messer, Samantha Van Seters, Mendy Miller, Kristy Schlueter-Kuck, Gad Getz

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Patterns (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Long-term Survival and Molecular Biomarker Evaluation of a Phase II Cetuximab and Nivolumab Clinical Trial in Recurrent/Metastatic Head and Neck Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Trial
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Claudia ChuBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Conor MesserBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Samantha Van SetersBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Mendy MillerBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Kristy Schlueter-KuckBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Gad GetzBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Manual review is an integral part of any study. As the cost of data generation continues to decrease, the rapid rise in large-scale multi-omic studies calls for a modular, flexible framework to perform what is currently a tedious, error-prone process. We developed

Indexed as

AnnoMateannotationscancer genomicsdashboardsgenomicsmanual reviewPlotlysequencingvisualization

Identifiers

PMID39569208
PMCPMC11574283

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.