Evidence map›Paper›PMID 39567830›Full record

ArticleThe EMBO journal2024

Viral N protein hijacks deaminase-containing RNA granules to enhance SARS-CoV-2 mutagenesis.

Zhean Li, Lingling Luo, Xiaohui Ju, Shisheng Huang, Liqun Lei, Yanying Yu, Jia Liu, Pumin Zhang, Tian Chi, Peixiang Ma and 4 more

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Drugs against broad-spectrum of coronaviruses.Frontiers in immunology · 2026
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Zhean Li *Zhejiang Provincial Key Laboratory of Pancreatic Disease, The First Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou, China.
Lingling Luo *School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Xiaohui Ju *Center for Infectious Disease Research, School of Medicine, Tsinghua University, Beijing, China.ORCID http://orcid.org/0000-0002-9552-0222
Shisheng Huang *School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Liqun LeiZhejiang Provincial Key Laboratory of Pancreatic Disease, The First Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou, China.
Yanying YuCenter for Infectious Disease Research, School of Medicine, Tsinghua University, Beijing, China.
Jia LiuShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China.ORCID http://orcid.org/0000-0001-9787-465X
Pumin ZhangZhejiang Provincial Key Laboratory of Pancreatic Disease, The First Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou, China.
Tian ChiSchool of Life Science and Technology, ShanghaiTech University, Shanghai, China.ORCID http://orcid.org/0000-0002-9675-6990
Peixiang MaShanghai Key Laboratory of Orthopedic Implants, Department of Orthopedic Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.ORCID http://orcid.org/0000-0001-6794-1663
Cheng HuangSchool of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, China. chuang@shutcm.edu.cn.ORCID http://orcid.org/0000-0003-0704-2943
Xingxu HuangZhejiang Provincial Key Laboratory of Pancreatic Disease, The First Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou, China. huangxx@shanghaitech.edu.cn.ORCID http://orcid.org/0000-0001-8934-1247
Qiang DingCenter for Infectious Disease Research, School of Medicine, Tsinghua University, Beijing, China. qding@tsinghua.edu.cn.ORCID http://orcid.org/0000-0002-6226-869X
Yu ZhangSchool of Life Science and Technology, ShanghaiTech University, Shanghai, China. zhangy@shanghaitech.edu.cn.ORCID http://orcid.org/0000-0001-9033-5012

Funding

Leading talents of Guangdong province program 2016LJ06S386MOST | National Key Research and Development Program of China (NKPs) 2021YFA0804702MOST | National Natural Science Foundation of China (NSFC) 22177073MOST | National Natural Science Foundation of China (NSFC) 32070153MOST | National Natural Science Foundation of China (NSFC) 82188102MOST | National Natural Science Foundation of China (NSFC) 82302497| Natural Science Foundation of Beijing Municipality () M21001Tsinghua University Spring Breeze Fund 2021Z99CFY030
6 · The paper itself

Abstract

Host cell-encoded deaminases act as antiviral restriction factors to impair viral replication and production through introducing mutations in the viral genome. We sought to understand whether deaminases are involved in SARS-CoV-2 mutation and replication, and how the viral factors interact with deaminases to trigger these processes. Here, we show that APOBEC and ADAR deaminases act as the driving forces for SARS-CoV-2 mutagenesis, thereby blocking viral infection and production. Mechanistically, SARS-CoV-2 nucleocapsid (N) protein, which is responsible for packaging viral genomic RNA, interacts with host deaminases and co-localizes with them at stress granules to facilitate viral RNA mutagenesis. N proteins from several coronaviruses interact with host deaminases at RNA granules in a manner dependent on its F17 residue, suggesting a conserved role in modulation of viral mutagenesis in other coronaviruses. Furthermore, mutant N protein bearing a F17A substitution cannot localize to deaminase-containing RNA granules and leads to reduced mutagenesis of viral RNA, providing support for its function in enhancing deaminase-dependent viral RNA editing. Our study thus provides further insight into virus-host cell interactions mediating SARS-CoV-2 evolution.

Indexed as

Adenosine DeaminaseCoronavirus Nucleocapsid ProteinsCOVID-19MutagenesisRNA, ViralSARS-CoV-2AnimalsAPOBEC DeaminasesChlorocebus aethiopsHEK293 CellsHumansMutationPhosphoproteinsRNA-Binding ProteinsVirus ReplicationADAR protein, humanAdenosine DeaminaseAPOBEC DeaminasesCoronavirus Nucleocapsid Proteinsnucleocapsid phosphoprotein, SARS-CoV-2PhosphoproteinsRNA-Binding ProteinsRNA, ViralDeaminasesInnate ImmunityMutagenesisSARS-CoV-2

Identifiers

PMID39567830
PMCPMC11649915

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.