Evidence map›Paper›PMID 39567827›Full record

ArticleThe EMBO journal2024

Sex-specific regulatory architecture of pancreatic islets from subjects with and without type 2 diabetes.

Mirza Muhammad Fahd Qadir, Ruth M Elgamal, Kejing Song, Parul Kudtarkar, Siva S V P Sakamuri, Prasad V Katakam, Samir S El-Dahr, Jay K Kolls, Kyle J Gaulton, Franck Mauvais-Jarvis

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Mirza Muhammad Fahd QadirSection of Endocrinology and Metabolism, John W. Deming Department of Medicine, Tulane University School of Medicine, New Orleans, LA, USA.ORCID http://orcid.org/0000-0002-6764-6151
Ruth M ElgamalBiomedical Sciences Graduate Program, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-9183-9386
Kejing SongCenter for Translational Research in Infection and Inflammation, John W. Deming Department of Medicine, Tulane University School of Medicine, New Orleans, LA, USA.
Parul KudtarkarDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.
Siva S V P SakamuriDepartment of Pharmacology, Tulane University School of Medicine, New Orleans, LA, USA.ORCID http://orcid.org/0000-0003-3569-9985
Prasad V KatakamDepartment of Pharmacology, Tulane University School of Medicine, New Orleans, LA, USA.
Samir S El-DahrDepartment of Pediatrics, Tulane University, School of Medicine, New Orleans, LA, USA.ORCID http://orcid.org/0000-0001-7571-4292
Jay K KollsCenter for Translational Research in Infection and Inflammation, John W. Deming Department of Medicine, Tulane University School of Medicine, New Orleans, LA, USA.
Kyle J GaultonDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.
Franck Mauvais-JarvisSection of Endocrinology and Metabolism, John W. Deming Department of Medicine, Tulane University School of Medicine, New Orleans, LA, USA. fmauvais@tulane.edu.ORCID http://orcid.org/0000-0002-0874-0754

Funding

The Human Islet Distribution Coordinating Center (UC4)UC4DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI EVANS-MOLINA, CARMELLA, NILAND, JOYCE CAROL · 2012 to 2017
$25.6M
The Human Pancreas Analysis Program for Type 2 DiabetesU01DK123594 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Robert Babak Faryabi, KLAUS H KAESTNER · 2019 to 2026
$25.0M
The next iteration of the AMP-T2D Knowledge PortalUM1DK105554 · NIDDK · BROAD INSTITUTE, INC. · PI BOEHNKE, MICHAEL L, BURTT, NOEL P · 2020 to 2025
$18.5M
Penn integrated Human Pancreas procurement and Analysis ProgramUC4DK112217 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI BETTS, MICHAEL R, FELDMAN, MICHAEL D · 2016 to 2020
$17.8M
Proposal for the AMP T2D-GENES Data Coordination Center and Web PortalU01DK105554 · NIDDK · BROAD INSTITUTE, INC. · PI FLOREZ, JOSE CARLOS · 2015 to 2019
$16.8M
Sex-Based Precision Medicine Research CoreP20GM152305 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI Yilin X Yoshida · 2024 to 2026
$8.9M
Supplement to Integrated Program for Human Pancreas Procurement and AnalysisUC4DK112232 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ATKINSON, MARK A., POWERS, ALVIN C · 2016 to 2020
$8.4M
The impact of genomic variation on environment-induced changes in pancreatic beta cell statesU01HG012059 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Hannah Kathryn Carter, Kyle Jeffrie Gaulton · 2021 to 2026
$7.5M
Human Pancreas Analysis Program-T2DU01DK123716 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ATKINSON, MARK A., BOTTINO, RITA · 2019 to 2024
$6.6M
Training in CD4 T-cell Lung ImmunityR35HL139930 · NHLBI · TULANE UNIVERSITY OF LOUISIANA · PI KOLLS, JAY K · 2018 to 2024
$6.3M
Targeting the estrogen receptor-α to protect functional β-cell mass in womenR01DK074970 · NIDDK · TULANE UNIVERSITY OF LOUISIANA · PI Franck Mauvais-Jarvis · 2007 to 2026
$6.0M
Single cell analysis of the human pancreas in type 1 diabetesU01DK120429 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GAULTON, KYLE JEFFRIE, SANDER, MAIKE · 2018 to 2021
$3.1M
BLRD VA I01 BX005812HHS | NIH | National Human Genome Research Institute (NHGRI) HG012059HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) 2UC4DK098085HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) DK074970HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) DK105554HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) DK114650HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) DK120429HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) U01DK123594HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) U01DK123716HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) UC4DK112217HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) UC4DK112232HHS | NIH | National Institute of General Medical Sciences (NIGMS) P20GM152305NHGRI NIH HHS U01 HG012059NHLBI NIH HHS R35 HL139930NIDDK NIH HHS R01 DK074970NIDDK NIH HHS R01 DK114650NIDDK NIH HHS U01 DK105554NIDDK NIH HHS U01 DK120429NIDDK NIH HHS U01 DK123594NIDDK NIH HHS U01 DK123716NIDDK NIH HHS UC4 DK098085NIDDK NIH HHS UC4 DK112217NIDDK NIH HHS UC4 DK112232NIDDK NIH HHS UM1 DK105554NIGMS NIH HHS P20 GM152305U.S. Department of Veterans Affairs (VA) BX005812
6 · The paper itself

Abstract

Patients with type 2 and type 1 diabetes (T2D and T1D) exhibit sex-specific differences in insulin secretion, the mechanisms of which are unknown. We examined sex differences in human pancreatic islets from 52 donors with and without T2D combining single cell RNA-sequencing (scRNA-seq) and single nucleus ATAC-sequencing (snATAC-seq) with assays probing hormone secretion and bioenergetics. In non-diabetic (ND) donors, sex differences in islet cell chromatin accessibility and gene expression predominantly involved sex chromosomes. In contrast, islets from T2D donors exhibited similar sex differences in sex chromosome-encoded differentially expressed genes (DEGs) as ND donors, but also exhibited sex differences in autosomal genes. Comparing β cells from T2D and ND donors, gene enrichment of female β cells showed suppression in mitochondrial respiration, while male β cells exhibited suppressed insulin secretion, suggesting a role for mitochondrial failure in females in the transition to T2D. We finally performed cell type-specific, sex stratified, GWAS restricted to differentially accessible chromatin peaks across T2D, fasting glucose, and fasting insulin traits. We identified that differentially accessible regions overlap with T2D-associated variants in a sex- and cell type-specific manner.

Indexed as

Diabetes Mellitus, Type 2AdultChromatinFemaleGene Expression RegulationGenome-Wide Association StudyHumansInsulinInsulin-Secreting CellsInsulin SecretionIslets of LangerhansMaleMiddle AgedMitochondriaSex CharacteristicsSex FactorsChromatinInsulinDiabetesIsletOMICSPrecision MedicineSex Differences

Identifiers

PMID39567827
PMCPMC11649919

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.