Evidence map›Paper›PMID 39567662›Full record

ArticleNature microbiology2024

Acquired amphotericin B resistance leads to fitness trade-offs that can be mitigated by compensatory evolution in Candida auris.

Hans Carolus, Dimitrios Sofras, Giorgio Boccarella, Poppy Sephton-Clark, Vladislav Biriukov, Nicholas C Cauldron, Celia Lobo Romero, Rudy Vergauwen, Saleh Yazdani, Siebe Pierson and 9 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Beyond intrinsic resistance: novel insights into the emergence and management of resistance acquired in Candida auris upon antifungal exposure.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Review
  7. Article
  8. hLife · 2026
    Article
  9. Micafungin exposure drives multidrug resistance inbioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Deciphering the multidrug resistance paradigm inAntimicrobial agents and chemotherapy · 2026
    Review
  16. Article
  17. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  18. Review
  19. EditingBiomolecules · 2026
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Hans Carolus *Laboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium. hans.carolus@kuleuven.be.ORCID http://orcid.org/0000-0003-1507-3475
Dimitrios Sofras *Laboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-1767-0831
Giorgio BoccarellaEvolutionary Modelling Group, Department of Microbial and Molecular Systems, KU Leuven, Leuven, Belgium.
Poppy Sephton-ClarkBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Vladislav BiriukovBarcelona Supercomputing Centre (BSC-CNS), Barcelona, Spain.ORCID http://orcid.org/0000-0002-1297-1555
Nicholas C CauldronMolecular Microbiology and Immunology Department, Brown University, Providence, RI, USA.ORCID http://orcid.org/0000-0003-0311-070X
Celia Lobo RomeroLaboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium.
Rudy VergauwenLaboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium.
Saleh YazdaniLaboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium.
Siebe PiersonLaboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium.
Stef JacobsLaboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0001-6535-4051
Paul VandecruysLaboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium.
Stefanie WijnantsLaboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium.
Jacques F MeisCentre of Expertise in Mycology, Radboudumc/CWZ, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-3253-6080
Toni GabaldónBarcelona Supercomputing Centre (BSC-CNS), Barcelona, Spain.ORCID http://orcid.org/0000-0003-0019-1735
Pieter van den BergEvolutionary Modelling Group, Department of Microbial and Molecular Systems, KU Leuven, Leuven, Belgium.
Jeffrey M RybakSt. Jude Children's Research Hospital, Memphis, TN, USA.
Christina A CuomoBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Patrick Van DijckLaboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Leuven, Belgium. patrick.vandijck@kuleuven.be.ORCID http://orcid.org/0000-0002-1542-897X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Candida auris is a growing concern due to its resistance to antifungal drugs, particularly amphotericin B (AMB), detected in 30 to 60% of clinical isolates. However, the mechanisms of AMB resistance remain poorly understood. Here we investigated 441 in vitro- and in vivo-evolved C. auris lineages from 4 AMB-susceptible clinical strains of different clades. Genetic and sterol analyses revealed four major types of sterol alterations as a result of clinically rare variations in sterol biosynthesis genes ERG6, NCP1, ERG11, ERG3, HMG1, ERG10 and ERG12. In addition, aneuploidies in chromosomes 4 and 6 emerged during resistance evolution. Fitness trade-off phenotyping and mathematical modelling identified diverse strain- and mechanism-dependent fitness trade-offs. Variation in CDC25 rescued fitness trade-offs, thereby increasing the infection capacity. This possibly contributed to therapy-induced acquired AMB resistance in the clinic. Our findings highlight sterol-modulating mechanisms and fitness trade-off compensation as risks for AMB treatment failure in clinical settings.

Indexed as

Amphotericin BAntifungal AgentsCandida aurisCandidiasisDrug Resistance, FungalMicrobial Sensitivity TestsAneuploidyAnimalsEvolution, MolecularGenetic FitnessHumansSterolsAmphotericin BAntifungal AgentsSterols

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.