Evidence map›Paper›PMID 39567629›Full record

ArticleScientific data2024

Chromosome-level genome assembly of the butterfly hillstream loach Beaufortia pingi.

Qi Shen, Xinhui Zhang, Hangyu Qi, Qiongying Tang, Qiang Sheng, Shaokui Yi

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Qi ShenSchool of Life Sciences, Huzhou University, Huzhou, 313000, China.
Xinhui ZhangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.ORCID 0000-0002-4462-761X
Hangyu QiSchool of Life Sciences, Huzhou University, Huzhou, 313000, China.
Qiongying TangSchool of Life Sciences, Huzhou University, Huzhou, 313000, China.
Qiang ShengSchool of Life Sciences, Huzhou University, Huzhou, 313000, China. qsheng@zjhu.edu.cn.
Shaokui YiSchool of Life Sciences, Huzhou University, Huzhou, 313000, China. yishaokui@foxmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Butterfly hillstream loach (Beaufortia pingi), an aquatic benthic fish species inhabiting mountain rapids, exhibits exceptional capabilities in movement, adsorption, and desorption processes, enabling it to adhere to smooth and contaminated surfaces in turbulent streams. These attributes make it a significant subject for genetic and evolutionary research. In this study, the genomic sequences of this species were acquired utilizing PacBio sequencing and Hi-C methods. The genome assembly is 459.8 Mb in size with a contig N50 of 5.35 Mb, and the assembled contigs were anchored into 25 chromosomes. BUSCO analysis confirmed a high completeness level with 97.0% gene coverage. A total of 111.47 Mb repetitive sequences (24.25% of the assembled genome), and 22,906 protein-coding genes were identified in the genome. This study represents the first investigation of the species' genome. The establishment of this genome assembly provides valuable resources for future genetic research and facilitates the study of genetic changes during evolution.

Indexed as

GenomeAnimalsChromosomesCypriniformes

Identifiers

PMID39567629
PMCPMC11579477

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.