Evidence map›Paper›PMID 39567492›Full record

ArticleNature communications2024

A framework for conducting GWAS using repeated measures data with an application to childhood BMI.

Kimberley Burrows, Anni Heiskala, Jonathan P Bradfield, Zhanna Balkhiyarova, Lijiao Ning, Mathilde Boissel, Yee-Ming Chan, Philippe Froguel, Amelie Bonnefond, Hakon Hakonarson and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Kimberley Burrows *MRC Integrative Epidemiology Unit at the University of Bristol, Bristol, UK.ORCID 0000-0002-3208-0389
Anni Heiskala *Research Unit of Population Health, University of Oulu, Oulu, Finland.ORCID 0009-0009-2342-2488
Jonathan P Bradfield *Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Zhanna Balkhiyarova *Department of Clinical and Experimental Medicine, School of Biosciences, University of Surrey, Guildford, UK.
Lijiao NingUniv Lille, INSERM/CNRS UMR1283/8199, EGID, Institut Pasteur de Lille, Lille University Hospital, Lille, France.ORCID 0000-0001-5958-3253
Mathilde BoisselUniv Lille, INSERM/CNRS UMR1283/8199, EGID, Institut Pasteur de Lille, Lille University Hospital, Lille, France.ORCID 0000-0001-5719-8749
Yee-Ming ChanDivision of Endocrinology, Department of Pediatrics, Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0003-0554-8502
Philippe FroguelUniv Lille, INSERM/CNRS UMR1283/8199, EGID, Institut Pasteur de Lille, Lille University Hospital, Lille, France.ORCID 0000-0003-2972-0784
Amelie BonnefondUniv Lille, INSERM/CNRS UMR1283/8199, EGID, Institut Pasteur de Lille, Lille University Hospital, Lille, France.
Hakon HakonarsonCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.ORCID 0000-0003-2814-7461
Alexessander Couto AlvesSchool of Biosciences and Medicine, University of Surrey, Guildford, UK.ORCID 0000-0001-8519-7356
Deborah A LawlorMRC Integrative Epidemiology Unit at the University of Bristol, Bristol, UK.ORCID 0000-0002-6793-2262
Marika KaakinenDepartment of Clinical and Experimental Medicine, School of Biosciences, University of Surrey, Guildford, UK.
Marjo-Riitta JärvelinResearch Unit of Population Health, University of Oulu, Oulu, Finland.ORCID 0000-0002-2149-0630
Struan F A GrantCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.ORCID 0000-0003-2025-5302
Kate TillingMRC Integrative Epidemiology Unit at the University of Bristol, Bristol, UK.ORCID 0000-0002-1010-8926
Inga ProkopenkoDepartment of Clinical and Experimental Medicine, School of Biosciences, University of Surrey, Guildford, UK.ORCID 0000-0003-1624-7457
Sylvain SebertResearch Unit of Population Health, University of Oulu, Oulu, Finland. Sylvain.Sebert@oulu.fi.ORCID 0000-0001-6681-6983
Mickaël CanouilUniv Lille, INSERM/CNRS UMR1283/8199, EGID, Institut Pasteur de Lille, Lille University Hospital, Lille, France.ORCID 0000-0002-3396-4549
Nicole M WarringtonInstitute for Molecular Bioscience, University of Queensland, Brisbane, Australia. n.warrington@uq.edu.au.ORCID 0000-0003-4195-775X

Funding

Genome Wide Association Study for Childhood ObesityR01HD056465 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI GRANT, STRUAN F A · 2008 to 2024
$9.5M
British Heart Foundation CH/F/20/90003Department of Health | National Health and Medical Research Council (NHMRC) APP2008723NICHD NIH HHS R01 HD056465
6 · The paper itself

Abstract

Genetic effects on changes in human traits over time are understudied and may have important pathophysiological impact. We propose a framework that enables data quality control, implements mixed models to evaluate trajectories of change in traits, and estimates phenotypes to identify age-varying genetic effects in GWAS. Using childhood BMI as an example trait, we included 71,336 participants from six cohorts and estimated the slope and area under the BMI curve within four time periods (infancy, early childhood, late childhood and adolescence) for each participant, in addition to the age and BMI at the adiposity peak and the adiposity rebound. GWAS of the 12 estimated phenotypes identified 28 genome-wide significant variants at 13 loci, one of which (in DAOA) has not been previously associated with childhood or adult BMI. Genetic studies of changes in human traits over time could uncover unique biological mechanisms influencing quantitative traits.

Indexed as

Body Mass IndexGenome-Wide Association StudyPhenotypeAdiposityAdolescentChildChild, PreschoolCohort StudiesFemaleHumansInfantMalePolymorphism, Single NucleotideQuantitative Trait Loci

Identifiers

PMID39567492
PMCPMC11579382

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.