Evidence map›Paper›PMID 39567481›Full record

ArticleNature communications2024

Unveiling RNA structure-mediated regulations of RNA stability in wheat.

Haidan Wu, Haopeng Yu, Yueying Zhang, Bibo Yang, Wenqing Sun, Lanying Ren, Yuchen Li, Qianqian Li, Bao Liu, Yiliang Ding and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. RNA regulation in plants.Science China. Life sciences · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. RNA encodes physical information.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Haidan Wu *Key Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun, China.
Haopeng Yu *Key Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun, China.ORCID 0000-0002-5184-2430
Yueying Zhang *Key Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun, China.ORCID 0000-0002-8678-3135
Bibo Yang *Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, UK.
Wenqing SunKey Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun, China.
Lanying RenKey Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun, China.
Yuchen LiKey Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun, China.
Qianqian LiDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, UK.
Bao LiuKey Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun, China. baoliu@nenu.edu.cn.ORCID 0000-0001-5481-1675
Yiliang DingDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, UK. yiliang.ding@jic.ac.uk.ORCID 0000-0003-4161-6365
Huakun ZhangKey Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun, China. zhanghk045@nenu.edu.cn.ORCID 0000-0002-4292-9040

Funding

RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/L025000/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/N022572/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BBS/E/J/000PR9788RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/X01102X/1
6 · The paper itself

Abstract

Despite the critical role of mRNA stability in post-transcriptional gene regulation, research on this topic in wheat, a vital agricultural crop, remains unclear. Our study investigated the mRNA decay landscape of durum wheat (Triticum turgidum L. ssp. durum, BBAA), revealing subgenomic asymmetry in mRNA stability and its impact on steady-state mRNA abundance. Our findings indicate that the 3' UTR structure and homoeolog preference for RNA structural motifs can influence mRNA stability, leading to subgenomic RNA decay imbalance. Furthermore, single-nucleotide variations (SNVs) selected for RNA structural motifs during domestication can cause variations in subgenomic mRNA stability and subsequent changes in steady-state expression levels. Our research on the transcriptome stability of polyploid wheat highlights the regulatory role of non-coding region structures in mRNA stability, and how domestication shaped RNA structure, altering subgenomic mRNA stability. These results illustrate the importance of RNA structure-mediated post-transcriptional gene regulation in wheat and pave the way for its potential use in crop improvement.

Indexed as

3' Untranslated RegionsGene Expression Regulation, PlantRNA, MessengerRNA, PlantRNA StabilityTriticumDomesticationNucleic Acid ConformationPolymorphism, Single NucleotidePolyploidyTranscriptome3' Untranslated RegionsRNA, MessengerRNA, Plant

Identifiers

PMID39567481
PMCPMC11579497

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.