Evidence map›Paper›PMID 39567394›Full record

ArticleClinical and experimental medicine2024

Development of hepatocellular carcinoma organoid model recapitulating HIF-1A metabolic signature.

Mennatallah A Khedr, Zainab Mohamed, Azza M El-Derby, Malak M Soliman, Amira Abdel Fattah Edris, Eman Badr, Nagwa El-Badri

Abstract read
In one paragraph

Article in Clinical and experimental medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. H4K5 lactylation - ENO2 loop drives glycolysis and HCC progression.JHEP reports : innovation in hepatology · 2026
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Biomedical applications of organoids derived from the digestive system.Frontiers in cell and developmental biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mennatallah A Khedr *Center of Excellence for Stem Cells and Regenerative Medicine, Zewail City of Science and Technology, Giza, 12578, Egypt.
Zainab Mohamed *University of Science and Technology, Zewail City of Science and Technology, Giza, 12578, Egypt.
Azza M El-Derby *Center of Excellence for Stem Cells and Regenerative Medicine, Zewail City of Science and Technology, Giza, 12578, Egypt.
Malak M SolimanBioinformatics Group, Center for Informatics Science (CIS), School of Information Technology and Computer Science, Nile University, Giza, 12588, Egypt.
Amira Abdel Fattah EdrisDepartment of Pediatrics, Cairo University, Cairo, 11956, Egypt.
Eman BadrUniversity of Science and Technology, Zewail City of Science and Technology, Giza, 12578, Egypt. emostafa@zewailcity.edu.eg.
Nagwa El-BadriCenter of Excellence for Stem Cells and Regenerative Medicine, Zewail City of Science and Technology, Giza, 12578, Egypt. nelbadri@zewailcity.edu.eg.

Funding

Egyptian Academy of Scientific Research and Technology (ASRT) Scientists for Next Generation (SNG) Grant, Cycle 7, and JESOR ♯ 5275
6 · The paper itself

Abstract

Hypoxia is one of the main hallmarks of hepatocellular carcinoma (HCC) resulting from improper oxygenation and insufficient nourishment of the HCC microenvironment. The effect of hypoxia is mediated by hypoxia-inducible factor-1A (HIF-1A) via targeting various downstream pathways, including glycolysis, angiogenesis, and survival signaling. However, HCC cell lines in a 2-dimensional (2D) setting do not resemble the metabolic signature of HCC. Here we aim to overcome these limitations by developing an HCC organoid that recapitulates the HIF-1A metabolic shift. The enrichment analysis of the RNA-Seq data revealed that HIF-1A-driven glycolytic shift is of the significant pathways. The established organoid model, using xeno-free plasma-derived extracellular matrix (ECM) as a scaffold and nutritive biomatrix, maintained its structural integrity and viability for up to 14 days; the comparative analysis of the cobalt (II) chloride (CoCl

Indexed as

Carcinoma, HepatocellularHypoxia-Inducible Factor 1, alpha SubunitLiver NeoplasmsOrganoidsCell Line, TumorCobaltGlycolysisHumansModels, BiologicalCobaltHIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitGlycolysisHepatocellular carcinomaHIF-1AHypoxiaMetabolismOrganoids

Identifiers

PMID39567394
PMCPMC11579110

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.