Evidence map›Paper›PMID 39566559›Full record

ArticleNature medicine2024

An organotypic atlas of human vascular cells.

Sam N Barnett, Ana-Maria Cujba, Lu Yang, Ana Raquel Maceiras, Shuang Li, Veronika R Kedlian, J Patrick Pett, Krzysztof Polanski, Antonio M A Miranda, Chuan Xu and 30 more

Abstract read
In one paragraph

Article in Nature medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The generation and characterization of CTRP9-CreCell regeneration (London, England) · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. A who's who of cell types in skeletal muscle.Communications biology · 2026
    Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Sam N Barnett *National Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-8968-4319
Ana-Maria Cujba *Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Lu Yang *Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Ana Raquel MaceirasWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0001-7045-1331
Shuang LiWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Veronika R KedlianWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
J Patrick PettWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-5249-444X
Krzysztof PolanskiWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-2586-9576
Antonio M A MirandaNational Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-4281-614X
Chuan XuWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
James CranleyWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Kazumasa KanemaruWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Michael LeeNational Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-0186-4439
Lukas MachNational Heart and Lung Institute, Imperial College London, London, UK.
Shani PereraWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Catherine TudorWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0003-2093-9683
Philomeena D JosephWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Sophie PritchardWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Rebecca Toscano-RivaltaNational Heart and Lung Institute, Imperial College London, London, UK.
Zewen K TuongWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-6735-6808
Liam BoltWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0001-7293-0774
Robert PetryszakWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Martin PreteWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Batuhan CakirWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0003-4513-606X
Alik HuseynovNational Heart and Lung Institute, Imperial College London, London, UK.
Ioannis SarropoulosWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-2242-0562
Rasheda A ChowdhuryNational Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-4204-1014
Rasa ElmentaiteWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Elo MadissoonWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Amanda J OliverWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0003-1690-9027
Lia CamposWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Agnieska BrazovskajaMax Planck Institute for Evolutionary Anthropology, Leipzig, Germany.ORCID http://orcid.org/0000-0001-7298-2072
Tomás GomesDepartment of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland.ORCID http://orcid.org/0000-0003-1333-0191
Barbara TreutleinMax Planck Institute for Evolutionary Anthropology, Leipzig, Germany.ORCID http://orcid.org/0000-0002-3299-5597
Chang N KimEli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-7921-4447
Tomasz J NowakowskiEli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco, San Francisco, CA, USA.
Kerstin B MeyerWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Anna M RandiNational Heart and Lung Institute, Imperial College London, London, UK.
Michela NosedaNational Heart and Lung Institute, Imperial College London, London, UK. m.noseda@imperial.ac.uk.ORCID http://orcid.org/0000-0002-9553-5029
Sarah A TeichmannWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK. sat1003@cam.ac.uk.ORCID http://orcid.org/0000-0002-6294-6366

Funding

British Heart Foundation (BHF) FS/CRTF/23/24444British Heart Foundation (BHF) RE/18/4/34215British Heart Foundation (BHF) RE/24/130023EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 646794Medical Research Council MC_PC_17230Rosetrees Trust PGS23/100028Wellcome TrustWellcome Trust (Wellcome) 220540/Z/20/A
6 · The paper itself

Abstract

The human vascular system, comprising endothelial cells (ECs) and mural cells, covers a vast surface area in the body, providing a critical interface between blood and tissue environments. Functional differences exist across specific vascular beds, but their molecular determinants across tissues remain largely unknown. In this study, we integrated single-cell transcriptomics data from 19 human organs and tissues and defined 42 vascular cell states from approximately 67,000 cells (62 donors), including angiotypic transitional signatures along the arterial endothelial axis from large to small caliber vessels. We also characterized organotypic populations, including splenic littoral and blood-brain barrier ECs, thus clarifying the molecular profiles of these important cell states. Interrogating endothelial-mural cell molecular crosstalk revealed angiotypic and organotypic communication pathways related to Notch, Wnt, retinoic acid, prostaglandin and cell adhesion signaling. Transcription factor network analysis revealed differential regulation of downstream target genes in tissue-specific modules, such as those of FOXF1 across multiple lung vascular subpopulations. Additionally, we make mechanistic inferences of vascular drug targets within different vascular beds. This open-access resource enhances our understanding of angiodiversity and organotypic molecular signatures in human vascular cells, and has therapeutic implications for vascular diseases across tissues.

Indexed as

Endothelial CellsSingle-Cell AnalysisBlood-Brain BarrierBlood VesselsGene Regulatory NetworksHumansOrgan SpecificitySignal TransductionTranscriptome

Identifiers

PMID39566559
PMCPMC11645277

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.