Evidence map›Paper›PMID 39565596›Full record

ArticleThe Journal of cell biology2024

Spc2 modulates substrate- and cleavage site-selection in the yeast signal peptidase complex.

Yeonji Chung, Chewon Yim, Gilberto P Pereira, Sungjoon Son, Lisbeth R Kjølbye, Lauren E Mazurkiewicz, Amy M Weeks, Friedrich Förster, Gunnar von Heijne, Paulo C T Souza and 1 more

Abstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Establishment of CRISPR/Cas9 Genome Editing inJournal of fungi (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Article
  5. Bridging Scales: Coarse-Grained Protein Models in Computational Biology.Advances in experimental medicine and biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yeonji Chung *School of Biological Sciences and Institute of Biodiversity, Seoul National University , Seoul, South Korea.ORCID 0009-0000-9326-6008
Chewon Yim *School of Biological Sciences and Institute of Biodiversity, Seoul National University , Seoul, South Korea.ORCID 0000-0002-0200-8458
Gilberto P Pereira *Laboratoire de Biologie et Modélisation de la Cellule, CNRS, UMR 5239, Inserm, U1293, Université Claude Bernard Lyon 1, Ecole Normale Supérieure de Lyon, Lyon, France.ORCID 0000-0002-6277-0006
Sungjoon SonSchool of Biological Sciences and Institute of Biodiversity, Seoul National University , Seoul, South Korea.ORCID 0009-0008-7613-2305
Lisbeth R KjølbyeMolecular Microbiology and Structural Biochemistry, CNRS UMR 5086 and Université Claude Bernard Lyon 1 , Lyon, France.ORCID 0000-0003-2834-3411
Lauren E MazurkiewiczDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-8045-6803
Amy M WeeksDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0003-4700-8256
Friedrich FörsterStructural Biochemistry, Bijvoet Centre for Biomolecular Research, Utrecht University , Utrecht, Netherlands.ORCID 0000-0002-6044-2746
Gunnar von HeijneDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.ORCID 0000-0002-4490-8569
Paulo C T SouzaLaboratoire de Biologie et Modélisation de la Cellule, CNRS, UMR 5239, Inserm, U1293, Université Claude Bernard Lyon 1, Ecole Normale Supérieure de Lyon, Lyon, France.ORCID 0000-0003-0660-1301
Hyun KimSchool of Biological Sciences and Institute of Biodiversity, Seoul National University , Seoul, South Korea.ORCID 0000-0003-2076-9020

Funding

Biotechnology Training ProgramT32GM135066 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SCOTT M. COYLE, BRIAN G FOX · 2020 to 2026
$7.0M
Burroughs Wellcome Fund 1017065Grand équipement national de calcul intensif 2022-A0120713456Knut and Alice Wallenberg Foundation 2017.0323National Research Foundation of Korea 2022R1A2C1010060NIGMS NIH HHS T32 GM135066NIH HHS 5 T32 GM135066Swedish Research Council 2020-03238University of Wisconsin
6 · The paper itself

Abstract

Secretory proteins are critically dependent on the correct processing of their signal sequence by the signal peptidase complex (SPC). This step, which is essential for the proper folding and localization of proteins in eukaryotic cells, is still not fully understood. In eukaryotes, the SPC comprises four evolutionarily conserved membrane subunits (Spc1-3 and Sec11). Here, we investigated the role of Spc2, examining SPC cleavage efficiency on various models and natural signal sequences in yeast cells depleted of or with mutations in Spc2. Our data show that discrimination between substrates and identification of the cleavage site by SPC is compromised when Spc2 is absent or mutated. Molecular dynamics simulation of the yeast SPC AlphaFold2-Multimer model indicates that membrane thinning at the center of SPC is reduced without Spc2, suggesting a molecular explanation for the altered substrate recognition properties of SPC lacking Spc2. These results provide new insights into the molecular mechanisms by which SPC governs protein biogenesis.

Indexed as

Membrane ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsMolecular Dynamics SimulationMutationProtein Sorting SignalsSubstrate SpecificityMembrane ProteinsProtein Sorting SignalsSaccharomyces cerevisiae Proteins

Identifiers

PMID39565596
PMCPMC11579918

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.