Evidence map›Paper›PMID 39565204›Full record

ArticleNucleic acids research2024

L1-ORF1p nucleoprotein can rapidly assume distinct conformations and simultaneously bind more than one nucleic acid.

Ben A Cashen, M Nabuan Naufer, Michael Morse, Micah J McCauley, Ioulia Rouzina, Charles E Jones, Anthony V Furano, Mark C Williams

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ben A CashenNortheastern University, Department of Physics, 360 Huntington Avenue, Boston, MA 02115, USA.
M Nabuan NauferNortheastern University, Department of Physics, 360 Huntington Avenue, Boston, MA 02115, USA.
Michael MorseNortheastern University, Department of Physics, 360 Huntington Avenue, Boston, MA 02115, USA.
Micah J McCauleyNortheastern University, Department of Physics, 360 Huntington Avenue, Boston, MA 02115, USA.
Ioulia RouzinaOhio State University, Department of Chemistry and Biochemistry, Center for Retroviral Research and Center for RNA Biology, 281 W Lane Avenue, Columbus, OH 43210, USA.
Charles E JonesThe Laboratory of Molecular and Cellular Biology, NIDDK, NIH, 8 Center Drive, Bethesda, MD 20892, USA.
Anthony V FuranoThe Laboratory of Molecular and Cellular Biology, NIDDK, NIH, 8 Center Drive, Bethesda, MD 20892, USA.
Mark C WilliamsNortheastern University, Department of Physics, 360 Huntington Avenue, Boston, MA 02115, USA.ORCID 0000-0003-3219-376X

Funding

Mammalian L1 retrotransposon replicationZIADK057601 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI FURANO, ANTHONY V. · 2009 to 2022
$7.2M
Intramural NIH HHS ZIA DK057601National Science Foundation MCB-1817712NIDDK NIH HHS ZIA DK057601-25
6 · The paper itself

Abstract

LINE-1 (L1) is a parasitic retrotransposable DNA element, active in primates for the last 80-120 Myr. L1 has generated nearly one-third of the human genome by copying its transcripts, and those of other genetic elements (e.g. Alu and SVA), into genomic DNA by target site-primed reverse transcription (TPRT) and remains active in modern humans. L1 encodes two proteins that bind their encoding transcript (cis preference) to form an L1 ribonucleoprotein (RNP) that mediates retrotransposition. ORF2p provides reverse transcriptase and endonuclease activity. ORF1p, its major component, is a homo-trimeric phospho-protein that binds single-stranded nucleic acid (ssNA) with high affinity and exhibits nucleic acid (NA) chaperone activity. We used optical tweezers to examine ORF1p binding to individual single-stranded DNA (ssDNA) molecules and found that the arrangement of ORF1p on the ssDNA depends on their molar ratio. When the concentration of ORF1p is just sufficient to saturate the entire NA molecule, the nucleoprotein (NP) is compact and stable. However, additional ORF1p binds and destabilizes the compacted NP, allowing it to engage a second ssDNA. Our results suggest that ORF1p displaced from its RNA template during TPRT could bind and destabilize remaining downstream L1 RNP, making them susceptible to hijacking by non-L1 templates, and thereby enable retrotransposition of non-L1 transcripts.

Indexed as

DNA, Single-StrandedLong Interspersed Nucleotide ElementsProtein BindingHumansNucleoproteinsRibonucleoproteinsDNA, Single-StrandedL1 ORF1 protein, humanNucleoproteinsRibonucleoproteins

Identifiers

PMID39565204
PMCPMC11662928

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.