Evidence map›Paper›PMID 39565088›Full record

ArticleProtein science : a publication of the Protein Society2024

A pressure-jump EPR system to monitor millisecond conformational exchange rates of spin-labeled proteins.

Julian D Grosskopf, Jason W Sidabras, Christian Altenbach, Jim R Anderson, Richard R Mett, Robert A Strangeway, James S Hyde, Wayne L Hubbell, Michael T Lerch

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Julian D GrosskopfDepartment of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.ORCID 0000-0003-4275-3628
Jason W SidabrasDepartment of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Christian AltenbachDepartment of Chemistry and Biochemistry and Stein Eye Institute, University of California, Los Angeles, California, USA.
Jim R AndersonDepartment of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Richard R MettDepartment of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Robert A StrangewayDepartment of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
James S Hyde *Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Wayne L HubbellDepartment of Chemistry and Biochemistry and Stein Eye Institute, University of California, Los Angeles, California, USA.
Michael T LerchDepartment of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.

Funding

Medical Scientist Training ProgramT32GM080202 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI BARBIERI, JOSEPH T, SALZMAN, NITA H · 2010 to 2024
$5.7M
Regulation of β2-adrenergic receptor signaling by post-translational modificationsR01GM135581 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI LERCH, MICHAEL TAYLOR · 2019 to 2023
$1.7M
MOLECULAR GENETICS OF EARLY EYE DEVELOPMENTZ01EY000311 · NEI · NATIONAL EYE INSTITUTE · PI TOMAREV, STANISLAV I · 1996 to 2008
$941k
Intramural NIH HHS Z01 EY000311NEI NIH HHS P30EY000311NIGMS NIH HHS R01 GM135581NIGMS NIH HHS R01GM135581NIGMS NIH HHS T32 GM080202Research to Prevent Blindness
6 · The paper itself

Abstract

Site-directed spin labeling electron paramagnetic resonance (SDSL-EPR) using nitroxide spin labels is a well-established technology for mapping site-specific secondary and tertiary structure and for monitoring conformational changes in proteins of any degree of complexity, including membrane proteins, with high sensitivity. SDSL-EPR also provides information on protein dynamics in the timescale of ps-μs using continuous wave lineshape analysis and spin lattice relaxation time methods. However, the functionally important time domain of μs-ms, corresponding to large-scale protein motions, is inaccessible to those methods. To extend SDSL-EPR to the longer time domain, the perturbation method of pressure-jump relaxation is implemented. Here, we describe a complete high-pressure EPR system at Q-band for both static pressure and ms-timescale pressure-jump measurements on spin-labeled proteins. The instrument enables pressure jumps both up and down from any holding pressure, ranging from atmospheric pressure to the maximum pressure capacity of the system components (~3500 bar). To demonstrate the utility of the system, we characterize a local folding-unfolding equilibrium of T4 lysozyme. The results illustrate the ability of the system to measure thermodynamic and kinetic parameters of protein conformational exchange on the ms timescale.

Indexed as

Protein ConformationSpin LabelsBacteriophage T4Electron Spin Resonance SpectroscopyMuramidasePressureMuramidaseSpin Labelsconformational exchangeelectron paramagnetic resonancepressurepressure jumpprotein foldingprotein kineticsprotein thermodynamics

Identifiers

PMID39565088
PMCPMC11577460

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.