Evidence map›Paper›PMID 39563265›Full record

ArticleBMC biotechnology2024

UGT708S6 from Dendrobium catenatum, catalyzes the formation of flavonoid C-glycosides.

Luyao Yu, Kun He, Yu Wu, Kai Hao, Yun Wang, Jinbo Yao, Yuxue Zhao, Qiaoxian Yu, Yanghui Shen, Mengxuan Chen and 3 more

Abstract read
In one paragraph

Article in BMC biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

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5 · Who and what money

Authors and funding

13 authors.

Luyao Yu *Department of Pharmaceutical Botany, School of Pharmacy, Naval Medical University, Shanghai, 200433, China.
Kun He *Department of Pharmaceutical Botany, School of Pharmacy, Naval Medical University, Shanghai, 200433, China.
Yu Wu *Department of Pharmaceutical Botany, School of Pharmacy, Naval Medical University, Shanghai, 200433, China.
Kai HaoDepartment of Pharmaceutical Botany, School of Pharmacy, Naval Medical University, Shanghai, 200433, China.
Yun WangBiomedical Innovation R&D Center, School of Medicine, Shanghai University, Shanghai, 200444, China.
Jinbo YaoState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, Zhejiang, 311300, China.
Yuxue ZhaoState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, Zhejiang, 311300, China.
Qiaoxian YuZhejiang Senyu Co., Ltd, Jinhua, Zhejiang, 312000, China.
Yanghui ShenPan'an Traditional Chinese Medicine Industry Innovation and Development Institute, Zhejiang, 322300, China.
Mengxuan ChenShanghai Analytical Applications Center, Shimadzu (China) Co., LTD, Shanghai, 200030, China.
Ke XuShanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China. kx2129@tongji.edu.cn.
Xinfeng ZhangState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, Zhejiang, 311300, China. zhangxf73@163.com.
Lei ZhangDepartment of Pharmaceutical Botany, School of Pharmacy, Naval Medical University, Shanghai, 200433, China. starzhanglei@aliyun.com.

Funding

The Major Science and Technology Projects of Breeding New Varieties of Agriculture in Zhejiang Province 2021C02074the National Key Research and Development Program of China 2022YFC3501703the National Natural Science Foundation for Distinguished Young Scholars 82225047the National Natural Science Foundation of China 82170274
6 · The paper itself

Abstract

backgroundDendrobium catenatum is a perennial herb of the genus Dendrobium orchidaceae. It has been known as "Golden Grass, Soft Gold" since ancient times with effects of strengthening the body, benefiting the stomach, generating body fluid, nourishing Yin and clearing internal heat. The flowers of D. catenatum have anti-oxidation, immune regulation and other biological activities. The composition analysis of flowers showed that flavonoid glycosides were significantly accumulated in floral tissue. However, in the flowers of D. catenatum, there was only one case of the UDP-glycosyltransferase (UGT) responsible for the glycosylation of flavonoids has been reported.

resultIn this study, a new UGT (named UGT708S6) was cloned from D. catenatum flowers rich in O-glycosides and C-glycosides, and its function and biochemical properties were characterized. Through homology comparison and molecular docking, we identified the key amino acid residues affecting the catalytic function of UGT708S6. The glycosyltransferase UGT708S6 was characterized and demonstrated C-glycosyltransferase (CGT) activity in vitro assay using phloretin and 2-hydroxynaringenin as sugar acceptors. The catalytic promiscuity assay revealed that UGT708S6 has a clear sugar donor preference, and displayed O-glycosyltransferase (OGT) activity towards luteolin, naringenin and liquiritigenin. Furthermore, the catalytic characteristics of UGT708S6 were explored, shedding light on the structural basis of substrate promiscuity and the catalytic mechanism involved in the formation of flavonoid C-glycosides. R271 was a key amino acid residue site that sustained the catalytic reaction. The smaller binding pocket resulted in the production of new O-glycosides and the reduction of C-glycosides. This highlighted the importance of the binding pocket in determining whether C-glycosides or O-glycosides were produced.

conclusionsThe findings suggest that UGT708S6 holds promise as a new glycosyltransferase for synthesizing flavonoid glycosides and offer valuable insights for further understanding the catalytic mechanisms of flavonoid glycosyltransferases.

Indexed as

DendrobiumFlavonoidsGlycosidesGlycosyltransferasesMolecular Docking SimulationCloning, MolecularFlowersGlycosylationPlant ProteinsSubstrate SpecificityC-glycosideFlavonoidsGlycosidesGlycosyltransferasesPlant ProteinsCatalytic characteristicsCatalytic mechanismC-glycosyltransferaseDendrobium catenatum flowerFlavonoid C-glycoside

Identifiers

PMID39563265
PMCPMC11577821

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.