Evidence map›Paper›PMID 39562586›Full record

ArticleNature communications2024

Evidence of horizontal gene transfer and environmental selection impacting antibiotic resistance evolution in soil-dwelling Listeria.

Ying-Xian Goh, Sai Manohar Balu Anupoju, Anthony Nguyen, Hailong Zhang, Monica Ponder, Leigh-Anne Krometis, Amy Pruden, Jingqiu Liao

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  9. Review
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  11. Genomic insights intoFrontiers in microbiology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Bioprotective Strategies to ControlInternational journal of molecular sciences · 2025
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ying-Xian GohDepartment of Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, 24061, USA.ORCID 0000-0002-0951-3596
Sai Manohar Balu AnupojuDepartment of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA.
Anthony NguyenComputational Modeling & Data Analytics Program, Virginia Tech, Blacksburg, VA, 24061, USA.
Hailong ZhangDepartment of Business Information Technology, Virginia Tech, Blacksburg, VA, 24061, USA.
Monica PonderCenter for Emerging, Zoonotic, and Arthropod-Borne Pathogens, Virginia Tech, Blacksburg, VA, 24061, USA.
Leigh-Anne KrometisCenter for Emerging, Zoonotic, and Arthropod-Borne Pathogens, Virginia Tech, Blacksburg, VA, 24061, USA.
Amy PrudenDepartment of Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, 24061, USA.ORCID 0000-0002-3191-6244
Jingqiu LiaoDepartment of Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, 24061, USA. liaoj@vt.edu.ORCID 0000-0002-2579-8157

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soil is an important reservoir of antibiotic resistance genes (ARGs) and understanding how corresponding environmental changes influence their emergence, evolution, and spread is crucial. The soil-dwelling bacterial genus Listeria, including L. monocytogenes, the causative agent of listeriosis, serves as a key model for establishing this understanding. Here, we characterize ARGs in 594 genomes representing 19 Listeria species that we previously isolated from soils in natural environments across the United States. Among the five putatively functional ARGs identified, lin, which confers resistance to lincomycin, is the most prevalent, followed by mprF, sul, fosX, and norB. ARGs are predominantly found in Listeria sensu stricto species, with those more closely related to L. monocytogenes tending to harbor more ARGs. Notably, phylogenetic and recombination analyses provide evidence of recent horizontal gene transfer (HGT) in all five ARGs within and/or across species, likely mediated by transformation rather than conjugation and transduction. In addition, the richness and genetic divergence of ARGs are associated with environmental conditions, particularly soil properties (e.g., aluminum and magnesium) and surrounding land use patterns (e.g., forest coverage). Collectively, our data suggest that recent HGT and environmental selection play a vital role in the acquisition and diversification of bacterial ARGs in natural environments.

Indexed as

Anti-Bacterial AgentsGene Transfer, HorizontalListeriaPhylogenySoil MicrobiologyDrug Resistance, BacterialEvolution, MolecularGenes, BacterialGenome, BacterialSelection, GeneticAnti-Bacterial Agents

Identifiers

PMID39562586
PMCPMC11577001

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.