Evidence map›Paper›PMID 39562585›Full record

ArticleScientific reports2024

Development of selective ssDNA micro-probe for PD1 detection as a novel strategy for cancer imaging.

Stanisław Malicki, Anna Czarna, Edyta Żyła, Barbara Pucelik, Wojciech Gałan, Barbara Chruścicka, Marta Kamińska, Alicja Sochaj-Gregorczyk, Katarzyna Magiera-Mularz, Jun Wang and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Stanisław MalickiLaboratory of Proteolysis and Post-translational Modification of Proteins, Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7a, Krakow, 30-387, Poland. stanislaw.malicki@uj.edu.pl.
Anna CzarnaProtein Crystallography Research, Group Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7a, Krakow, 30-387, Poland.
Edyta ŻyłaProtein Crystallography Research, Group Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7a, Krakow, 30-387, Poland.
Barbara PucelikProtein Crystallography Research, Group Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7a, Krakow, 30-387, Poland.
Wojciech GałanDepartment of Computational Biophysics and Bioinformatics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, Krakow, 30-387, Poland.
Barbara ChruścickaLaboratory of Proteolysis and Post-translational Modification of Proteins, Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7a, Krakow, 30-387, Poland.
Marta KamińskaBroegelmann Research Laboratory, University of Bergen, Haukeland universitetssykehus Laboratoriebygget, Bergen, 5009, Norway.
Alicja Sochaj-GregorczykLaboratory of Proteolysis and Post-translational Modification of Proteins, Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7a, Krakow, 30-387, Poland.
Katarzyna Magiera-MularzFaculty of Chemistry, Jagiellonian University, Gronostajowa 2, Krakow, 30-387, Poland.
Jun WangSchool of Biomedical Sciences and Engineering, Guangzhou International Campus, South China University of Technology, Guangzhou, 511442, People's Republic of China.
Marek Winiarski2nd Department of General Surgery, Faculty of Medicine, Jagiellonian University Medical College, Kraków, 31-008, Poland.
Małgorzata Benedyk-MachaczkaDepartment of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, Krakow, 30-387, Poland.
Joanna KoziełDepartment of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, Krakow, 30-387, Poland.
Grzegorz DubinProtein Crystallography Research, Group Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7a, Krakow, 30-387, Poland. grzegorz.dubin@uj.edu.pl.
Piotr MydelDepartment of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, Krakow, 30-387, Poland. piotr.mydel@uib.no.

Funding

European Regional Development Fund in the framework of the Polish Innovation Economy Operational Program POIG.02.01.00-12-167/08, project Małopolska Centre of BiotechnologyFoundation for Polish Science TEAM TECH CORE FACILITY/2017-4/6National Centre for Research and Development, Poland NOR/SGS (0141/2020-00 Aptaquest)National Science Centre, Poland 2017/25/B/NZ1/00827National Science Centre, Poland 2018/02/X/NZ1/02015Norwegian Research Council NFR 296129Polish National Agency for Academic Exchange NAWA Polish Returns 2018 (PPN/PPO/2018/1/00046/U/00001)
6 · The paper itself

Abstract

Programmed death receptor 1, PD1, modulates the function of immune cells by providing inhibitory signals and constitutes the marker of immune exhaustion. Monitoring the level of PD1 promises a useful diagnostic approach in autoimmune diseases and cancer. Here we describe the development of an ssDNA aptamer-based molecular probe capable of specific recognition of human PD1 receptor. The aptamer was selected using SELEX, its sequence was further optimized, and the affinity and specificity were determined in biochemical assays. The aptamer was converted into a fluorescent probe and its potential in molecular imaging was demonstrated in a culture of human cells overexpressing PD1 and murine pancreatic organoids / immune cells mixed co-culture model. We conclude that the provided aptamers are suitable probes for imaging of PD1 expressing immune cells even in complex cellular models and may find future utility as diagnostic tools.

Indexed as

Aptamers, NucleotideDNA, Single-StrandedProgrammed Cell Death 1 ReceptorSELEX Aptamer TechniqueAnimalsCell Line, TumorCoculture TechniquesFluorescent DyesHumansMiceMolecular ImagingMolecular ProbesNeoplasmsAptamers, NucleotideDNA, Single-StrandedFluorescent DyesMolecular ProbesPDCD1 protein, humanProgrammed Cell Death 1 Receptor

Identifiers

PMID39562585
PMCPMC11576874

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.