Evidence map›Paper›PMID 39560655›Full record

ArticleeLife2024

Disordered proteins interact with the chemical environment to tune their protective function during drying.

Shraddha Kc, Kenny H Nguyen, Vincent Nicholson, Annie Walgren, Tony Trent, Edith Gollub, Paulette Sofia Romero-Perez, Alex S Holehouse, Shahar Sukenik, Thomas C Boothby

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Biomolecular condensates-Prerequisites for anhydrobiosis?Protein science : a publication of the Protein Society · 2025
    Review
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Shraddha KcDepartment of Molecular Biology, University of Wyoming, Laramie, United States.ORCID https://orcid.org/0000-0003-3317-988X
Kenny H NguyenDepartment of Molecular Biology, University of Wyoming, Laramie, United States.
Vincent NicholsonDepartment of Molecular Biology, University of Wyoming, Laramie, United States.
Annie WalgrenDepartment of Molecular Biology, University of Wyoming, Laramie, United States.
Tony TrentDepartment of Molecular Biology, University of Wyoming, Laramie, United States.
Edith GollubDepartment of Chemistry and Biochemistry, University of California Merced, Merced, United States.
Paulette Sofia Romero-PerezDepartment of Chemistry and Biochemistry, University of California Merced, Merced, United States.
Alex S HolehouseDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, United States.ORCID https://orcid.org/0000-0002-4155-5729
Shahar SukenikDepartment of Chemistry and Biochemistry, University of California Merced, Merced, United States.ORCID https://orcid.org/0000-0003-3855-9574
Thomas C BoothbyDepartment of Molecular Biology, University of Wyoming, Laramie, United States.ORCID https://orcid.org/0000-0002-8807-3268

Funding

Wyoming INBRE Phase 4- Equipment Supplement for x-ray diffractometer for Center for Advanced Scientific InstrumentationP20GM103432 · NIGMS · UNIVERSITY OF WYOMING · PI Nicolas A. Blouin · 2012 to 2026
$56.8M
Uncovering the structural underpinnings of function in disordered transcription factor regionsR35GM137926 · NIGMS · UNIVERSITY OF CALIFORNIA, MERCED · PI Shahar Sukenik · 2020 to 2026
$2.5M
National Science Foundation 2128067National Science Foundation 2128068National Science Foundation 2128069NIGMS NIH HHS 2P20GM103432NIGMS NIH HHS P20 GM103432NIGMS NIH HHS R35 GM137926USDA National Institute of Food and Agriculture 1012152
6 · The paper itself

Abstract

The conformational ensemble and function of intrinsically disordered proteins (IDPs) are sensitive to their solution environment. The inherent malleability of disordered proteins, combined with the exposure of their residues, accounts for this sensitivity. One context in which IDPs play important roles that are concomitant with massive changes to the intracellular environment is during desiccation (extreme drying). The ability of organisms to survive desiccation has long been linked to the accumulation of high levels of cosolutes such as trehalose or sucrose as well as the enrichment of IDPs, such as late embryogenesis abundant (LEA) proteins or cytoplasmic abundant heat-soluble (CAHS) proteins. Despite knowing that IDPs play important roles and are co-enriched alongside endogenous, species-specific cosolutes during desiccation, little is known mechanistically about how IDP-cosolute interactions influence desiccation tolerance. Here, we test the notion that the protective function of desiccation-related IDPs is enhanced through conformational changes induced by endogenous cosolutes. We find that desiccation-related IDPs derived from four different organisms spanning two LEA protein families and the CAHS protein family synergize best with endogenous cosolutes during drying to promote desiccation protection. Yet the structural parameters of protective IDPs do not correlate with synergy for either CAHS or LEA proteins. We further demonstrate that for CAHS, but not LEA proteins, synergy is related to self-assembly and the formation of a gel. Our results suggest that functional synergy between IDPs and endogenous cosolutes is a convergent desiccation protection strategy seen among different IDP families and organisms, yet the mechanisms underlying this synergy differ between IDP families.

Indexed as

DesiccationIntrinsically Disordered ProteinsAnimalsProtein ConformationTrehaloseIntrinsically Disordered ProteinsTrehaloseanhydrobiosisbiochemistrychemical biologycosolutesdesiccation toleranceintrinsically disordered proteinsnonesynergy

Identifiers

PMID39560655
PMCPMC11575898

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.