Evidence map›Paper›PMID 39558572›Full record

ArticleMolecular informatics2025

Extended Activity Cliffs-Driven Approaches on Data Splitting for the Study of Bioactivity Machine Learning Predictions.

Kenneth López-Pérez, Ramón Alain Miranda-Quintana

Abstract read
In one paragraph

Article in Molecular informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Kenneth López-PérezDepartment of Chemistry and Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA.
Ramón Alain Miranda-QuintanaDepartment of Chemistry and Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA.ORCID https://orcid.org/0000-0003-2121-4449

Funding

Tackling Big Data problems in biomedical sciences with extended similarity methodsR35GM150620 · NIGMS · UNIVERSITY OF FLORIDA · PI Ramon Alain Miranda Quintana · 2023 to 2026
$1.4M
NIGMS NIH HHS R35 GM150620
6 · The paper itself

Abstract

The presence of Activity Cliffs (ACs) has been known to represent a challenge for QSAR modeling. With its high data dependency, Machine Learning QSAR models will be directly influenced by the activity landscape. We propose several extended similarity and extended SALI methods to study the implications of ACs distribution on the training and test sets on the model's errors. Ununiform ACs and chemical space distribution tend to lead to worse models than the proposed uniform methods. ML modeling on AC-rich sets needs to be analyzed case-by-case. Proposed methods can be used as a tool to study the datasets, but as far as generalization, random splitting was the better-performing data splitting alternative overall.

Indexed as

Machine LearningQuantitative Structure-Activity Relationshipactivity cliffschemical spacedrug designextended similaritysimilaritystructure activity relationships

Identifiers

PMID39558572
PMCPMC12143937

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.