Evidence map›Paper›PMID 39558431›Full record

ArticleEnvironmental microbiome2024

Selenium alters the gene content but not the taxonomic composition of the soil microbiome.

Alison E Bennett, Scott Kelsey, Casey Saup, Mike Wilkins, Antonino Malacrinò

Abstract read
In one paragraph

Article in Environmental microbiome, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alison E BennettDepartment of Evolution, Ecology, and Organismal Biology, The Ohio State University, Columbus, OH, USA.
Scott KelseyDepartment of Evolution, Ecology, and Organismal Biology, The Ohio State University, Columbus, OH, USA.
Casey SaupSchool of Earth Sciences, The Ohio State University, Columbus, OH, USA.
Mike WilkinsDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, CO, USA.
Antonino MalacrinòDepartment of Agriculture, Università degli Studi Mediterranea di Reggio Calabria, Reggio Calabria, Italy. antonino.malacrino@unirc.it.

Funding

Ohio State University Center for Applied Plant Sciences NA
6 · The paper itself

Abstract

backgroundMicrobiomes, essential to ecosystem processes, face strong selective forces that can drive rapid evolutionary adaptation. However, our understanding of evolutionary processes within natural systems remains limited. We investigated evolution in response to naturally occurring selenium in soils of different geological parental materials on the Western Slope of Colorado. Our study focused on examining changes in gene frequencies within microbial communities in response to selenium exposure.

resultsDespite expectations of taxonomic composition shifts and increased gene content changes at high-selenium sites, we found no significant alterations in microbial diversity or community composition. Surprisingly, we observed a significant increase in differentially abundant genes within high-selenium sites.

conclusionsThese findings are suggestive that selection within microbiomes primarily drives the accumulation of genes among existing microbial taxa, rather than microbial species turnover, in response to strong stressors like selenium. Our study highlights an unusual system that allows us to examine evolution in response to the same stressor annually in a non-model system, contributing to understanding microbiome evolution beyond model systems.

Indexed as

Amplicon sequencingHeavy metalShotgun metagenomics

Identifiers

PMID39558431
PMCPMC11575018

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.