ArticleBMC genomics2024
Genomic exploration of Iranian almond (Prunus dulcis) germplasm: decoding diversity, population structure, and linkage disequilibrium through genotyping-by-sequencing analysis.
Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.
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Who cites it
5 citing papers in PubMed.
- Plastome architecture and maternal relationships of cultivated almond (Prunus dulcis) and its wild relatives.Planta · 2026Article
- Genetic Dissection of Adaptation Traits in Apricot Through GWAS and QTL Analyses.International journal of molecular sciences · 2026Article
- Phytochemical profile and antioxidant activity of almond (Prunus amygdalus Batsch.) cultivars from northwestern Iran.Scientific reports · 2026Article
- Multi-trait evaluation of almond germplasm using the MGIDI method: optimizing yield and nutritional quality.Scientific reports · 2026Article
- Genetic variability in almond (Prunus dulcis L.) in South Türkiye: morphological, biochemical, and SSR analyses.BMC plant biology · 2025Article
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Authors and funding
5 authors.
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Abstract
This study focuses on the genetic diversity and population structure of Prunus dulcis (almond tree), a crucial agricultural component with widespread cultivation and commercial importance, particularly in Iran, a region with a longstanding tradition of almond cultivation. The diverse almond collection in Iran encompasses many local varieties, breeding selections, rootstocks, and international cultivars. This diversity necessitates advanced genotyping techniques to gain insights into genetic diversity, population structure, and linkage disequilibrium (LD). In this paper, genotyping-by-sequencing (GBS) was employed to analyze 62 almond germplasm samples, identifying approximately 63,537 high-quality single nucleotide polymorphisms (SNPs) distributed across the eight chromosomes of the almond genome. On average, there were 30,225 SNPs per chromosome. The analysis yielded an average polymorphism information content (PIC) of 0.315 and an expected heterozygosity (He) rate of 0.28, indicating a significant level of genetic diversity within the studied almond germplasm. The LD analysis demonstrated a rapid decline, with an average LD decay spanning approximately 300 kb for an r
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