Evidence map›Paper›PMID 39558160›Full record

ArticleNucleic acids research2024

Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation.

Annika Niedner-Boblenz, Thomas Monecke, Janosch Hennig, Melina Klostermann, Mario Hofweber, Elena Davydova, André P Gerber, Irina Anosova, Wieland Mayer, Marisa Müller and 7 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. [Mechanisms of RNA-binding protein phase separation in steroid-associated necrosis of the femoral head].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2026
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Annika Niedner-BoblenzInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Thomas MoneckeInstitute of Pharmaceutical Biotechnology, Ulm University, James-Franck-Ring N27, 89081 Ulm, Germany.ORCID 0000-0003-3748-710X
Janosch HennigInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.ORCID 0000-0001-5214-7002
Melina KlostermannBuchmann Institute for Molecular Life Sciences (BMLS) and Institute of Molecular Biosciences, Goethe University Frankfurt, Max-von-Laue-Str. 15, 60438 Frankfurt, Germany.ORCID 0000-0003-3122-1095
Mario HofweberDepartment of Anatomy and Cell Biology, Biomedical Center of the Ludwig-Maximilians University München, Großhaderner Str. 9, 82152 Planegg-Martinsried, Germany.
Elena DavydovaInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
André P GerberDepartment of Microbial Sciences, School of Biosciences, Faculty of Health and Medical Sciences, University of Surrey, Stag Hill Campus, 10AX01, Guildford GU2 7XH, UK.ORCID 0000-0002-2398-6592
Irina AnosovaInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Wieland MayerInstitute of Pharmaceutical Biotechnology, Ulm University, James-Franck-Ring N27, 89081 Ulm, Germany.
Marisa MüllerInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Roland Gerhard HeymInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Robert JanowskiInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Jean-Christophe PaillartIBMC, Architecture et Réactivité de l'ARN, Université de Strasbourg, CNRS, 2 allée Konrad Roentgen, 67000 Strasbourg, France.ORCID 0000-0003-1647-8917
Dorothee DormannDepartment of Anatomy and Cell Biology, Biomedical Center of the Ludwig-Maximilians University München, Großhaderner Str. 9, 82152 Planegg-Martinsried, Germany.
Kathi ZarnackBuchmann Institute for Molecular Life Sciences (BMLS) and Institute of Molecular Biosciences, Goethe University Frankfurt, Max-von-Laue-Str. 15, 60438 Frankfurt, Germany.ORCID 0000-0003-3527-3378
Michael SattlerInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Dierk NiessingInstitute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.ORCID 0000-0001-9267-6072

Funding

Deutsche Forschungsgemeinschaft FOR855
6 · The paper itself

Abstract

RNA-binding proteins are essential for gene regulation and the spatial organization of cells. Here, we report that the yeast ribosome biogenesis factor Loc1p is an intrinsically disordered RNA-binding protein with eight repeating positively charged, unstructured nucleic acid binding (PUN) motifs. While a single of these previously undefined motifs stabilizes folded RNAs, multiple copies strongly cooperate to catalyze RNA folding. In the presence of RNA, these multivalent PUN motifs drive phase separation. Proteome-wide searches in pro- and eukaryotes for proteins with similar arrays of PUN motifs reveal a strong enrichment in RNA-mediated processes and DNA remodeling. Thus, PUN motifs are potentially involved in a large variety of RNA- and DNA-related processes by concentrating them in membraneless organelles. The general function and wide distribution of PUN motifs across species suggest that in an ancient 'RNA world' PUN-like motifs may have supported the correct folding of early ribozymes.

Indexed as

Intrinsically Disordered ProteinsRNA-Binding ProteinsRNA FoldingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsNucleic Acid ConformationPhase SeparationRNARNA-Binding MotifsRNA, FungalIntrinsically Disordered ProteinsRNARNA-Binding ProteinsRNA, FungalSaccharomyces cerevisiae Proteins

Identifiers

PMID39558160
PMCPMC11662656

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.