Evidence map›Paper›PMID 39557915›Full record

ArticleScientific reports2024

Isolation and characterization of DNA aptamers against the HlyE antigen of Salmonella Typhi.

Mohamad Ahmad Najib, Anja Winter, Khairul Mohd Fadzli Mustaffa, Eugene Boon Beng Ong, Kasturi Selvam, Muhammad Fazli Khalid, Mohd Syafiq Awang, Asrulnizam Abd Manaf, Yazmin Bustami, Ismail Aziah

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Protein-centric mechanisms of typhoidalFrontiers in cellular and infection microbiology · 2026
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Mohamad Ahmad NajibInstitute for Research in Molecular Medicine (INFORMM), Universiti Sains Malaysia, Kubang Kerian, Kelantan, 16150, Malaysia.
Anja WinterSchool of Life Sciences, Keele University, Staffordshire, UK.
Khairul Mohd Fadzli MustaffaInstitute for Research in Molecular Medicine (INFORMM), Universiti Sains Malaysia, Kubang Kerian, Kelantan, 16150, Malaysia.
Eugene Boon Beng OngInstitute for Research in Molecular Medicine (INFORMM), Universiti Sains Malaysia, Gelugor, Pulau Pinang, 11800, Malaysia.
Kasturi SelvamInstitute for Research in Molecular Medicine (INFORMM), Universiti Sains Malaysia, Kubang Kerian, Kelantan, 16150, Malaysia.
Muhammad Fazli KhalidInstitute for Research in Molecular Medicine (INFORMM), Universiti Sains Malaysia, Kubang Kerian, Kelantan, 16150, Malaysia.
Mohd Syafiq AwangCollaborative Microelectronic Design Excellence Centre (CEDEC), Universiti Sains Malaysia, Bayan Lepas, Pulau Pinang, 11900, Malaysia.
Asrulnizam Abd ManafCollaborative Microelectronic Design Excellence Centre (CEDEC), Universiti Sains Malaysia, Bayan Lepas, Pulau Pinang, 11900, Malaysia.
Yazmin BustamiSchool of Biological Sciences, Universiti Sains Malaysia, Gelugor, Pulau Pinang, 11800, Malaysia.
Ismail AziahInstitute for Research in Molecular Medicine (INFORMM), Universiti Sains Malaysia, Kubang Kerian, Kelantan, 16150, Malaysia. aziahismail@usm.my.

Funding

Collaborative Research in Engineering, Science and Technology Centre 304/CIPPM/6150181/C121Ministry of Higher Education, Malaysia A305-KR-AKH002-0004401005-0000
6 · The paper itself

Abstract

Aptamers have emerged as prominent ligands in clinical diagnostics because they provide various advantages over antibodies, such as quicker generation time, reduced manufacturing costs, minimal batch-to-batch variability, greater modifiability, and improved thermal stability. In the present study, we isolated and characterized DNA aptamers that can specifically bind to the hemolysin E (HlyE) antigen of Salmonella Typhi for future development of typhoid diagnostic tests. The DNA aptamers against Salmonella Typhi HlyE were isolated using systematic evolution of ligands by exponential enrichment (SELEX), and their binding affinity and specificity were assessed utilizing enzyme-linked oligonucleotide assay (ELONA). A total of 11 distinct aptamers were identified, and the binding affinities and species selectivities of the three most probable aptamers were determined. Kd values were obtained in the nanomolar range, with the highest affinity of 83.6 nM determined for AptHlyE97. In addition, AptHlyE11, AptHlyE45 and AptHlyE97 clearly distinguished S. Typhi HlyE from other tested bacteria, such as Salmonella Paratyphi A, Salmonella Paratyphi B, Shigella flexneri, Klebsiella pneumonia and Escherichia coli, therefore displaying desirable specificity. These novel aptamers could be used as diagnostic ligands for the future development of inexpensive and effective point-of-care tests for typhoid surveillance, especially in developing countries of the tropics and subtropics.

Indexed as

Aptamers, NucleotideSalmonella typhiSELEX Aptamer TechniqueAntigens, BacterialBacterial ProteinsHumansTyphoid FeverAntigens, BacterialAptamers, NucleotideBacterial ProteinsDNA aptamersHlyE antigenSalmonella TyphiSELEX

Identifiers

PMID39557915
PMCPMC11574307

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