Evidence map›Paper›PMID 39557883›Full record

ArticleNature communications2024

A modular platform for bioluminescent RNA tracking.

Lila P Halbers, Kyle H Cole, Kevin K Ng, Erin B Fuller, Christelle E T Chan, Chelsea Callicoatte, Mariajose Metcalfe, Claire C Chen, Ahfnan A Barhoosh, Edison Reid-McLaughlin and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. A miniature bioluminescent platform for imaging structured RNAs.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Bioluminescent Probes for Multiplexed RNA Imaging.Journal of the American Chemical Society · 2026
    Article
  5. Article
  6. Protein engineering: status report.Protein engineering, design & selection : PEDS · 2026
    Review
  7. Article
  8. Review
  9. De Novo Design of High-Performance Cortisol Luminescent Biosensors.Journal of the American Chemical Society · 2025
    Article
  10. Article
  11. Luciferase complementation for cellular assays beyond protein-protein interactions.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2025
    Review
  12. Rapid discovery of functional RNA domains.Nucleic acids research · 2025
    Article
  13. Imaging methods to monitor and quantify cell differentiation.Frontiers in cell and developmental biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Lila P Halbers *Department of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA, USA.ORCID 0009-0005-4684-3307
Kyle H Cole *Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, USA.
Kevin K Ng *Department of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA, USA.
Erin B FullerDepartment of Chemistry, University of California, Irvine, Irvine, CA, USA.ORCID 0009-0006-8711-5960
Christelle E T ChanDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA, USA.ORCID 0000-0002-5198-5861
Chelsea CallicoatteDepartment of Anatomy and Neurobiology, University of California, Irvine, Irvine, CA, USA.
Mariajose MetcalfeDepartment of Anatomy and Neurobiology, University of California, Irvine, Irvine, CA, USA.
Claire C ChenDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA, USA.
Ahfnan A BarhooshDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA, USA.
Edison Reid-McLaughlinDepartment of Chemistry, University of California, Irvine, Irvine, CA, USA.
Alexandra D KentDepartment of Chemistry, University of California, Irvine, Irvine, CA, USA.
Zachary R TorreyDepartment of Chemistry, University of California, Irvine, Irvine, CA, USA.
Oswald StewardDepartment of Anatomy and Neurobiology, University of California, Irvine, Irvine, CA, USA. osteward@uci.edu.
Andrej LuptákDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA, USA. aluptak@uci.edu.ORCID 0000-0002-0632-5442
Jennifer A PrescherDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA, USA. jpresche@uci.edu.ORCID 0000-0002-9250-4702

Funding

Role of UHRF1 in osteosarcoma metastasisR01CA229696 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI BENAVENTE, CLAUDIA ANDREA · 2019 to 2023
$2.4M
NCI NIH HHS R01 CA229696
6 · The paper itself

Abstract

A complete understanding of RNA biology requires methods for tracking transcripts in vivo. Common strategies rely on fluorogenic probes that are limited in sensitivity, dynamic range, and depth of interrogation, owing to their need for excitation light and tissue autofluorescence. To overcome these challenges, we report a bioluminescent platform for serial imaging of RNAs. The RNA tags are engineered to recruit light-emitting luciferase fragments (termed RNA lanterns) upon transcription. Robust photon production is observed for RNA targets both in cells and in live animals. Importantly, only a single copy of the tag is necessary for sensitive detection, in sharp contrast to fluorescent platforms requiring multiple repeats. Overall, this work provides a foundational platform for visualizing RNA dynamics from the micro to the macro scale.

Indexed as

Luminescent MeasurementsRNAAnimalsHumansLuciferasesMiceLuciferasesRNA

Identifiers

PMID39557883
PMCPMC11574019

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.