Evidence map›Paper›PMID 39557858›Full record

ArticleNature communications2024

TET3 regulates terminal cell differentiation at the metabolic level.

Isabel Mulet, Carmen Grueso-Cortina, Mireia Cortés-Cano, Daniela Gerovska, Guangming Wu, Stefania Alexandra Iakab, Daniel Jimenez-Blasco, Andrea Curtabbi, Pablo Hernansanz-Agustín, Harmony Ketchum and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Isabel Mulet *Stem Cell Molecular Genetics Unit, Institute of Biomedicine of Valencia, Spanish National Research Council, Valencia, Spain.
Carmen Grueso-Cortina *Stem Cell Molecular Genetics Unit, Institute of Biomedicine of Valencia, Spanish National Research Council, Valencia, Spain.
Mireia Cortés-Cano *Stem Cell Molecular Genetics Unit, Institute of Biomedicine of Valencia, Spanish National Research Council, Valencia, Spain.
Daniela GerovskaGroup of Computational Biology and Systems Biomedicine, Biogipuzkoa Health Research Institute, San Sebastián, Spain.ORCID 0000-0003-0671-4277
Guangming WuGuangzhou National Laboratory, Guangzhou, China.ORCID 0000-0003-1923-7609
Stefania Alexandra IakabCenter for Mass Spectrometry and Optical Spectroscopy, Manheim University of Applied Sciences, Mannheim, Germany.ORCID 0000-0002-4156-1942
Daniel Jimenez-BlascoInstitute of Functional Biology and Genomics, University of Salamanca, Spanish National Research Council, Salamanca, Spain.ORCID 0000-0002-1384-1832
Andrea CurtabbiCardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.
Pablo Hernansanz-AgustínCardiovascular Regeneration Program, Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.
Harmony KetchumRuth L. and David S. Gottesman Institute for Stem Cell and Regenerative Medicine Resarch, Albert Einstein College of Medicine, New York, USA.
Israel Manjarrés-RazaInstitute of Functional Biology and Genomics, University of Salamanca, Spanish National Research Council, Salamanca, Spain.ORCID 0000-0001-6314-9839
F Thomas WunderlichMax Planck Institute for Metabolism Research, Cologne, Germany.ORCID 0000-0002-9209-3501
Juan Pedro BolañosInstitute of Functional Biology and Genomics, University of Salamanca, Spanish National Research Council, Salamanca, Spain.ORCID 0000-0002-3949-6862
Meelad M DawlatyRuth L. and David S. Gottesman Institute for Stem Cell and Regenerative Medicine Resarch, Albert Einstein College of Medicine, New York, USA.
Carsten HopfCenter for Mass Spectrometry and Optical Spectroscopy, Manheim University of Applied Sciences, Mannheim, Germany.ORCID 0000-0003-0802-6451
José Antonio EnríquezCenter of Biomedical Networking Research for Frailty and Healthy Ageing, Madrid, Spain.ORCID 0000-0002-3671-2961
Marcos J Araúzo-BravoGroup of Computational Biology and Systems Biomedicine, Biogipuzkoa Health Research Institute, San Sebastián, Spain.ORCID 0000-0002-3264-464X
Natalia TapiaStem Cell Molecular Genetics Unit, Institute of Biomedicine of Valencia, Spanish National Research Council, Valencia, Spain. ntapia@ibv.csic.es.ORCID 0000-0003-0226-1952

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TET-family members play a critical role in cell fate commitment. Indeed, TET3 is essential to postnatal development due to yet unknown reasons. To define TET3 function in cell differentiation, we have profiled the intestinal epithelium at single-cell level from wild-type and Tet3 knockout mice. We have found that Tet3 is mostly expressed in differentiated enterocytes. In the absence of TET3, enterocytes exhibit an aberrant differentiation trajectory and do not acquire a physiological cell identity due to an impairment in oxidative phosphorylation, specifically due to an ATP synthase assembly deficiency. Moreover, spatial metabolomics analysis has revealed that Tet3 knockout enterocytes exhibit an unphysiological metabolic profile when compared with their wild-type counterparts. In contrast, no metabolic differences have been observed between both genotypes in the stem cell compartment where Tet3 is mainly not expressed. Collectively, our findings suggest a mechanism by which TET3 regulates mitochondrial function and, thus, terminal cell differentiation at the metabolic level.

Indexed as

Cell DifferentiationDioxygenasesEnterocytesMice, KnockoutMitochondriaOxidative PhosphorylationAnimalsDNA-Binding ProteinsIntestinal MucosaMetabolomicsMiceMice, Inbred C57BLSingle-Cell AnalysisDioxygenasesDNA-Binding ProteinsTet3 protein, mouse

Identifiers

PMID39557858
PMCPMC11573987

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.