Evidence map›Paper›PMID 39556827›Full record

ArticleJMIR medical informatics2024

Task-Specific Transformer-Based Language Models in Health Care: Scoping Review.

Ha Na Cho, Tae Joon Jun, Young-Hak Kim, Heejun Kang, Imjin Ahn, Hansle Gwon, Yunha Kim, Jiahn Seo, Heejung Choi, Minkyoung Kim and 4 more

Abstract readScoping Review
In one paragraph

Article in JMIR medical informatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ha Na Cho *Department of Information Medicine, Asan Medical Center, Seoul, Republic of Korea.ORCID 0000-0001-8033-6644
Tae Joon Jun *Big Data Research Center, Asan Institute for Life Sciences, Asan Medical Center, Seoul, Republic of Korea.ORCID 0000-0002-6808-5149
Young-Hak Kim *Division of Cardiology, Department of Information Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.ORCID 0000-0002-3610-486X
Heejun KangDivision of Cardiology, Asan Medical Center, Seoul, Republic of Korea.ORCID 0000-0002-0396-2112
Imjin AhnDepartment of Information Medicine, Asan Medical Center, Seoul, Republic of Korea.ORCID 0000-0003-3929-6390
Hansle GwonDepartment of Information Medicine, Asan Medical Center, Seoul, Republic of Korea.ORCID 0000-0001-6019-4466
Yunha KimDepartment of Medical Science, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.ORCID 0000-0001-6713-1900
Jiahn SeoDepartment of Medical Science, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.ORCID 0000-0002-3589-1347
Heejung ChoiDepartment of Medical Science, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.ORCID 0000-0003-2265-1819
Minkyoung KimDepartment of Medical Science, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.ORCID 0000-0003-4923-5321
Jiye HanDepartment of Medical Science, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.ORCID 0000-0002-1366-8275
Gaeun KeeDepartment of Information Medicine, Asan Medical Center, Seoul, Republic of Korea.ORCID 0000-0002-2377-3503
Seohyun ParkDepartment of Information Medicine, Asan Medical Center, Seoul, Republic of Korea.ORCID 0000-0003-2658-8757
Soyoung KoDepartment of Information Medicine, Asan Medical Center, Seoul, Republic of Korea.ORCID 0009-0003-6268-1534

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTransformer-based language models have shown great potential to revolutionize health care by advancing clinical decision support, patient interaction, and disease prediction. However, despite their rapid development, the implementation of transformer-based language models in health care settings remains limited. This is partly due to the lack of a comprehensive review, which hinders a systematic understanding of their applications and limitations. Without clear guidelines and consolidated information, both researchers and physicians face difficulties in using these models effectively, resulting in inefficient research efforts and slow integration into clinical workflows.

objectiveThis scoping review addresses this gap by examining studies on medical transformer-based language models and categorizing them into 6 tasks: dialogue generation, question answering, summarization, text classification, sentiment analysis, and named entity recognition.

methodsWe conducted a scoping review following the Cochrane scoping review protocol. A comprehensive literature search was performed across databases, including Google Scholar and PubMed, covering publications from January 2017 to September 2024. Studies involving transformer-derived models in medical tasks were included. Data were categorized into 6 key tasks.

resultsOur key findings revealed both advancements and critical challenges in applying transformer-based models to health care tasks. For example, models like MedPIR involving dialogue generation show promise but face privacy and ethical concerns, while question-answering models like BioBERT improve accuracy but struggle with the complexity of medical terminology. The BioBERTSum summarization model aids clinicians by condensing medical texts but needs better handling of long sequences.

conclusionsThis review attempted to provide a consolidated understanding of the role of transformer-based language models in health care and to guide future research directions. By addressing current challenges and exploring the potential for real-world applications, we envision significant improvements in health care informatics. Addressing the identified challenges and implementing proposed solutions can enable transformer-based language models to significantly improve health care delivery and patient outcomes. Our review provides valuable insights for future research and practical applications, setting the stage for transformative advancements in medical informatics.

Indexed as

Delivery of Health CareHumansNatural Language Processinghealth caremedical language modelmedicinetransformer-based language models

Identifiers

PMID39556827
PMCPMC11612605

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.