Evidence map›Paper›PMID 39556100›Full record

ArticleThe Journal of heredity2025

Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America.

Charles Perrier, Rémi Allio, Fabrice Legeai, Mathieu Gautier, Frédéric Bénéluz, William Marande, Anthony Theron, Nathalie Rodde, Melfran Herrera, Laure Sauné and 3 more

Abstract read
In one paragraph

Article in The Journal of heredity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Charles PerrierUMR CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, Montpellier, France.ORCID 0000-0001-5820-9374
Rémi AllioUMR CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, Montpellier, France.ORCID 0000-0003-3885-5410
Fabrice LegeaiBIPAA IGEPP, INRAE Institut Agro Univ Rennes Rennes France.ORCID 0000-0002-6472-4839
Mathieu GautierUMR CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, Montpellier, France.ORCID 0000-0001-7257-5880
Frédéric BénéluzSociété entomologique Antilles-Guyane, SEAG, Rémire-Montjoly, France.
William MarandeFrench Plant Genomic Resource Center, CNRGV, INRAE, Castanet Tolosan, France.
Anthony TheronFrench Plant Genomic Resource Center, CNRGV, INRAE, Castanet Tolosan, France.
Nathalie RoddeFrench Plant Genomic Resource Center, CNRGV, INRAE, Castanet Tolosan, France.ORCID 0000-0003-3361-4730
Melfran HerreraCoordinación de Vigilancia Epidemiológica Ambiental, Dirección Estadal de Salud Ambiental, FUNDASALUD, Estado Sucre, Venezuela.
Laure SaunéUMR CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, Montpellier, France.
Hugues ParrinelloMGX-Montpellier GenomiX, Université Montpellier, CNRS, INSERM, Montpellier, France.ORCID 0000-0002-1151-001X
Melanie McClureLaboratoire Écologie, Évolution, Interactions des Systèmes Amazoniens (LEEISA), Université de Guyane, CNRS, IFREMER, Cayenne, France.ORCID 0000-0003-3590-4002
Mónica AriasCIRAD, UMR PHIM, F-34398, Montpellier, France.ORCID 0000-0003-1331-2604

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present the first nuclear genome assembly and a complete mitogenome for Hylesia metabus (Arthropoda; Insecta; Lepidoptera; Saturniidae). The assembled nuclear genome sequence is 1,271 Mb long, which is among the 10 largest lepidopteran genome assemblies published to date. It is scaffolded in 31 pseudo chromosomes, has a BUSCO score of 99.5%, and has a highly conserved synteny compared with phylogenetically close species. Repetitive elements make up 67% of the nuclear genome and are mainly located in intergenic regions, among which LINEs were predominant, with CR1-Zenon being the most abundant. Phylogenetic and comparative analyses of H. metabus assembly and 17 additional Saturniidae and Sphingidae assemblies suggested that an accumulation of repetitive elements likely led to the increased size of H. metabus' genome. Gene annotation using Helixer identified 26,122 transcripts. The Z scaffold was identified using both a synteny analysis and variations of coverage for two resequenced male and female H. metabus. The H. metabus nuclear genome and mitogenome assemblies can be found and browsed on the BIPAA website and constitute useful resources for future population and comparative genomics studies.

Indexed as

DNA Transposable ElementsGenome, InsectGenome SizeMothsAnimalsFemaleGenome, MitochondrialMalePhylogenySouth AmericaSyntenyDNA Transposable Elementsashen mothlepidopterismpopulation outbreaksrepetitive elementsyellowtail moth

Identifiers

PMID39556100
PMCPMC12130439

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.