Evidence map›Paper›PMID 39555787›Full record

ArticleJournal of visualized experiments : JoVE2024

Confocal Microscopy Analysis of Protein Sorting to Plasmodesmata in Nicotiana benthamiana.

Yumin Kan, Eli Simons, Vitaly Citovsky

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yumin KanDepartment of Biochemistry and Cell Biology, State University of New York; yumin.kan@stonybrook.edu.
Eli SimonsDepartment of Biochemistry and Cell Biology, State University of New York.
Vitaly CitovskyDepartment of Biochemistry and Cell Biology, State University of New York.

Funding

TRANSPORT THROUGH PLASMODESMATAR01GM050224 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI CITOVSKY, VITALY H · 1994 to 2020
$5.7M
Writers and Erasers of Ubiquitin Moieties in Control of Cell-to-Cell Transport in PlantsR35GM144059 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI VITALY H CITOVSKY · 2022 to 2026
$2.2M
NIGMS NIH HHS R01 GM050224NIGMS NIH HHS R35 GM144059
6 · The paper itself

Abstract

Plasmodesmata are membranous nanopores that connect the cytoplasm of adjacent plant cells and enable the cell-to-cell trafficking of nutrients, macromolecules, as well as invading viruses. Plasmodesmata play fundamental roles in the regulation of intercellular communication, contributing to plant development, environmental responses, and interactions with viral pathogens. Discovering plasmodesmal localization of plant or viral proteins could provide useful functional information about the protein and is important for understanding the mechanisms of plant-virus interactions. To facilitate these studies, we describe a protocol for confocal microscopy-based analysis of different plasmodesmal targeting proteins to select the best plasmodesmal marker for studying the virus-plasmodesmata interactions or plasmodesmal transport. Specifically, the analyses of these events are illustrated using the cell-to-cell movement protein (MP) of the Turnip vein-clearing virus (TVCV), the Arabidopsis Plasmodesmata-Localized Protein 5 (PDLP5) and Plasmodesmata Callose-Binding Protein 1 (PDCB1). The protein plasmodesmal localization data are analyzed in parallel with the global visualization of plasmodesmata using aniline blue staining of the sampled tissues. These approaches can be easily adapted to analyze the plasmodesmal localization of any cellular or pathogen proteins in planta.

Indexed as

Microscopy, ConfocalNicotianaPlasmodesmataArabidopsis ProteinsMembrane ProteinsPlant Viral Movement ProteinsProtein TransportArabidopsis ProteinsMembrane ProteinsPDLP5 protein, ArabidopsisPlant Viral Movement Proteins

Identifiers

PMID39555787
PMCPMC11581684

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.