Evidence map›Paper›PMID 39555692›Full record

ArticleThe New phytologist2025

A fungal sRNA silences a host plant transcription factor to promote arbuscular mycorrhizal symbiosis.

Alessandro Silvestri, William Conrad Ledford, Valentina Fiorilli, Cristina Votta, Alessia Scerna, Jacopo Tucconi, Antonio Mocchetti, Gianluca Grasso, Raffaella Balestrini, Hailing Jin and 2 more

Abstract read
In one paragraph

Article in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
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  10. Review
  11. Review
  12. Article
  13. Article
  14. Application of Virus-Induced Gene Silencing to Arbuscular Mycorrhizal Fungi.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Frontiers in plant science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Alessandro Silvestri *Department of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.ORCID https://orcid.org/0000-0002-1635-7050
William Conrad Ledford *Department of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.ORCID https://orcid.org/0000-0001-7130-2960
Valentina FiorilliDepartment of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.ORCID https://orcid.org/0000-0001-9805-1559
Cristina VottaDepartment of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.ORCID https://orcid.org/0000-0001-6685-6547
Alessia ScernaDepartment of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.
Jacopo TucconiDepartment of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.
Antonio MocchettiDepartment of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.
Gianluca GrassoDepartment of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.ORCID https://orcid.org/0000-0001-9865-0017
Raffaella BalestriniInstitute of Biosciences and Bioresources, CNR, via Amendola 165/A, 70126, Bari, Italy.ORCID https://orcid.org/0000-0002-5450-1746
Hailing JinDepartment of Microbiology and Plant Pathology, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, 900 University Avenue, Riverside, CA, 92521, USA.ORCID https://orcid.org/0000-0001-5778-5193
Ignacio Rubio-SomozaMolecular Reprogramming and Evolution (MoRE) Lab, Centre for Research in Agricultural Genomics (CRAG), Carrer de la Vall Moronta, 08193 Cerdanyola del Vallès, Barcelona, Spain.ORCID https://orcid.org/0000-0003-0754-816X
Luisa LanfrancoDepartment of Life Sciences and Systems Biology, University of Torino, Viale Mattioli 25, 10125, Turin, Italy.ORCID https://orcid.org/0000-0002-3961-2552

Funding

European Commission CN_00000033European Union's Horizon 2020 945043MCIN/AEI/ 10.13039/501100011033 RTI2018-097262-B-I00Università degli Studi di Torino
6 · The paper itself

Abstract

Cross-kingdom RNA interference (ckRNAi) is a mechanism of interspecies communication where small RNAs (sRNAs) are transported from one organism to another; these sRNAs silence target genes in trans by loading into host AGO proteins. In this work, we investigated the occurrence of ckRNAi in Arbuscular Mycorrhizal Symbiosis (AMS). We used an in silico prediction analysis to identify a sRNA (Rir2216) from the AM fungus Rhizophagus irregularis and its putative plant gene target, the Medicago truncatula MtWRKY69 transcription factor. Heterologous co-expression assays in Nicotiana benthamiana, 5' RACE reactions and AGO1-immunoprecipitation assays from mycorrhizal roots were used to characterize the Rir2216-MtWRKY69 interaction. We further analyzed MtWRKY69 expression profile and the contribution of constitutive and conditional MtWRKY69 expression to AMS. We show that Rir2216 is loaded into an AGO1 silencing complex from the host plant M. truncatula, leading to cleavage of a host target transcript encoding for the MtWRKY69 transcription factor. MtWRKY69 is specifically downregulated in arbusculated cells in mycorrhizal roots and increased levels of MtWRKY69 expression led to a reduced AM colonization level. Our results indicate that MtWRKY69 silencing, mediated by a fungal sRNA, is relevant for AMS; we thus present the first experimental evidence of fungus to plant ckRNAi in AMS.

Indexed as

GlomeromycotaMedicago truncatulaMycorrhizaePlant ProteinsRNA, FungalRNA, Small UntranslatedSymbiosisTranscription FactorsArgonaute ProteinsFungiGene Expression Regulation, PlantGene SilencingNicotianaPlant RootsArgonaute ProteinsPlant ProteinsRNA, FungalRNA, Small UntranslatedTranscription Factorsarbuscular mycorrhizal symbiosiscross‐kingdom RNA interferenceMedicago truncatulaRhizophagus irregularissmall RNA

Identifiers

PMID39555692
PMCPMC11982788

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.