Evidence map›Paper›PMID 39554150›Full record

ArticlebioRxiv : the preprint server for biology2024

High-throughput development and characterization of new functional nanobodies for gene regulation and epigenetic control in human cells.

Jun Wan, Abby R Thurm, Sage J Allen, Connor H Ludwig, Aayan N Patel, Lacramioara Bintu

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jun WanDepartment of Bioengineering, Stanford University, Stanford, CA, 94305.ORCID 0000-0002-4504-8505
Abby R ThurmProgram in Biophysics, Stanford University School of Medicine, Stanford, CA, 94305.ORCID 0000-0002-1819-3192
Sage J AllenDepartment of Bioengineering, Stanford University, Stanford, CA, 94305.ORCID 0000-0003-3889-5463
Connor H LudwigDepartment of Bioengineering, Stanford University, Stanford, CA, 94305.ORCID 0000-0002-9159-7628
Aayan N PatelDepartment of Bioengineering, Stanford University, Stanford, CA, 94305.ORCID 0009-0000-6029-8900
Lacramioara BintuDepartment of Bioengineering, Stanford University, Stanford, CA, 94305.ORCID 0000-0001-5443-6633

Funding

Medical Scientist Training ProgramT32GM145402 · NIGMS · STANFORD UNIVERSITY · PI Katrin F. Chua · 2022 to 2026
$10.0M
High-throughput development and characterization of compact tools for transcriptional and chromatin perturbationsR01HG011866 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL C BASSIK, Lacramioara Bintu · 2021 to 2026
$6.9M
High-Throughput Measurements of RNA-Mediated Regulation of Gene Expression and OncogenesisF30CA287739 · NCI · STANFORD UNIVERSITY · PI Abby Thurm · 2024 to 2026
$136k
NCI NIH HHS F30 CA287739NHGRI NIH HHS R01 HG011866NIGMS NIH HHS T32 GM145402
6 · The paper itself

Abstract

Controlling gene expression and chromatin state via the recruitment of transcriptional effector proteins to specific genetic loci has advanced the potential of mammalian synthetic biology, but is still hindered by the challenge of delivering large chromatin regulators. Here, we develop a new method for generating small nanobodies against human chromatin regulators that can repress or activate gene expression. We start with a large and diverse nanobody library and perform enrichment against chromatin regulatory complexes using yeast display, followed by high-throughput pooled selection for transcriptional control when recruited to a reporter in human cells. This workflow allows us to efficiently select tens of functional nanobodies that can act as transcriptional repressors or activators in human cells.

Identifiers

PMID39554150
PMCPMC11566033

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.