Evidence map›Paper›PMID 39554013›Full record

ArticlebioRxiv : the preprint server for biology2025

Visualization of liquid-liquid phase transitions using a tiny G-quadruplex binding protein.

Bikash R Sahoo, Xiexiong Deng, Ee Lin Wong, Nathan Clark, Harry J Yang, Alexey Kovalenko, Vivekanandan Subramanian, Bryan B Guzman, Sarah E Harris, Budheswar Dehury and 7 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Bikash R SahooHoward Hughes Medical Institute.
Xiexiong DengHoward Hughes Medical Institute.
Ee Lin WongHoward Hughes Medical Institute.
Nathan ClarkHoward Hughes Medical Institute.
Harry J YangHoward Hughes Medical Institute.
Alexey KovalenkoHoward Hughes Medical Institute.
Vivekanandan SubramanianCollege of Pharmacy, University of Kentucky, Lexington, KY-40508, USA.
Bryan B GuzmanDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC-27514, USA.
Sarah E HarrisDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC-27514, USA.
Budheswar DehuryDepartment of Bioinformatics, Manipal School of Life Sciences, Manipal-576104, India.
Emi MiyashitaCenter for iPS Cell Research and Application, Kyoto University, Kyoto-6068507, Japan.
J Damon HoffDepartment of Biophysics, University of Michigan, Ann Arbor, MI-48109, USA.
Vojč KocmanSlovenian NMR Centre, National Institute of Chemistry, Ljubljana, Slovenia.
Hirohide SaitoCenter for iPS Cell Research and Application, Kyoto University, Kyoto-6068507, Japan.ORCID 0000-0002-8570-5784
Daniel DominguezDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC-27514, USA.
Janez PlavecSlovenian NMR Centre, National Institute of Chemistry, Ljubljana, Slovenia.
James C A BardwellHoward Hughes Medical Institute.

Funding

Protein Disorder as a Modifier of RNA Binding and RegulationR35GM142864 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Daniel Issac Dominguez · 2021 to 2026
$2.5M
NIGMS NIH HHS R35 GM142864
6 · The paper itself

Abstract

Liquid-liquid phase transitions govern a wide range of protein-protein and protein-RNA interactions. Although the importance of multivalency and protein disorder in driving these transitions is clear, there is limited knowledge concerning the structural basis of phase transitions or the conformational changes that accompany this process. In this work, we found that a small human protein, SERF2, is important for the formation of stress granules. We determined the solution NMR structure ensemble of SERF2. We show that SERF2 specifically interacts with non-canonical tetrahelical RNA structures called G-quadruplexes, structures linked to stress granule formation. The biophysical amenability of both SERF2 and RNA G4 quadruplexes have allowed us to characterize the multivalent protein-RNA interactions involved in liquid-liquid phase transitions, the role that protein disorder plays in these transitions, identify the specific contacts involved, and describe how these interactions impact the structural dynamics of the components enabling a detailed understanding of the structural transitions involved in early stages of ribonucleoprotein condensate formation.

Identifiers

PMID39554013
PMCPMC11565804

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.