Evidence map›Paper›PMID 39553851›Full record

ArticleDigital discovery2025

ArcaNN: automated enhanced sampling generation of training sets for chemically reactive machine learning interatomic potentials.

Rolf David, Miguel de la Puente, Axel Gomez, Olaia Anton, Guillaume Stirnemann, Damien Laage

Abstract read
In one paragraph

Article in Digital discovery, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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  9. Weighted active space protocol for multireference machine-learned potentials.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  15. Prebiotic chemical reactivity in solution with quantum accuracy and microsecond sampling using neural network potentials.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rolf DavidPASTEUR, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS 75005 Paris France rolf.david@ens.psl.eu guillaume.stirnemann@ens.psl.eu damien.laage@ens.psl.eu.ORCID https://orcid.org/0000-0001-5338-6267
Miguel de la PuentePASTEUR, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS 75005 Paris France rolf.david@ens.psl.eu guillaume.stirnemann@ens.psl.eu damien.laage@ens.psl.eu.ORCID https://orcid.org/0000-0002-4432-9612
Axel GomezPASTEUR, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS 75005 Paris France rolf.david@ens.psl.eu guillaume.stirnemann@ens.psl.eu damien.laage@ens.psl.eu.ORCID https://orcid.org/0000-0002-0378-4352
Olaia AntonPASTEUR, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS 75005 Paris France rolf.david@ens.psl.eu guillaume.stirnemann@ens.psl.eu damien.laage@ens.psl.eu.ORCID https://orcid.org/0009-0004-8013-0098
Guillaume StirnemannPASTEUR, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS 75005 Paris France rolf.david@ens.psl.eu guillaume.stirnemann@ens.psl.eu damien.laage@ens.psl.eu.
Damien LaagePASTEUR, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS 75005 Paris France rolf.david@ens.psl.eu guillaume.stirnemann@ens.psl.eu damien.laage@ens.psl.eu.ORCID https://orcid.org/0000-0001-5706-9939

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emergence of artificial intelligence is profoundly impacting computational chemistry, particularly through machine-learning interatomic potentials (MLIPs). Unlike traditional potential energy surface representations, MLIPs overcome the conventional computational scaling limitations by offering an effective combination of accuracy and efficiency for calculating atomic energies and forces to be used in molecular simulations. These MLIPs have significantly enhanced molecular simulations across various applications, including large-scale simulations of materials, interfaces, chemical reactions, and beyond. Despite these advances, the construction of training datasets-a critical component for the accuracy of MLIPs-has not received proportional attention, especially in the context of chemical reactivity, which depends on rare barrier-crossing events that are not easily included in the datasets. Here we address this gap by introducing ArcaNN, a comprehensive framework designed for generating training datasets for reactive MLIPs. ArcaNN employs a concurrent learning approach combined with advanced sampling techniques to ensure an accurate representation of high-energy geometries. The framework integrates automated processes for iterative training, exploration, new configuration selection, and energy and force labeling, all while ensuring reproducibility and documentation. We demonstrate ArcaNN's capabilities through two paradigm reactions: a nucleophilic substitution and a Diels-Alder reaction. These examples showcase its effectiveness, the uniformly low error of the resulting MLIP everywhere along the chemical reaction coordinate, and its potential for broad applications in reactive molecular dynamics. Finally, we provide guidelines for assessing the quality of MLIPs in reactive systems.

Identifiers

PMID39553851
PMCPMC11563209

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.