Evidence map›Paper›PMID 39551936›Full record

ArticleNucleic acids research2024

AcrIIIA1 is a protein-RNA anti-CRISPR complex that targets core Cas and accessory nucleases.

Lucy Chou-Zheng, Olivia Howell, Tori A Boyle, Motaher Hossain, Forrest C Walker, Emma K Sheriff, Barbaros Aslan, Asma Hatoum-Aslan

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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  5. Article
  6. Article
  7. Mechanism of Cas9 inhibition by AcrIIA11.Nucleic acids research · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lucy Chou-ZhengDepartment of Microbiology, University of Illinois, 601 S. Goodwin Avenue, Urbana, IL 61801, USA.
Olivia HowellDepartment of Microbiology, University of Illinois, 601 S. Goodwin Avenue, Urbana, IL 61801, USA.
Tori A BoyleDepartment of Microbiology, University of Illinois, 601 S. Goodwin Avenue, Urbana, IL 61801, USA.
Motaher HossainDepartment of Microbiology, University of Illinois, 601 S. Goodwin Avenue, Urbana, IL 61801, USA.
Forrest C WalkerDepartment of Biological Sciences, University of Alabama, 1325 Hackberry Lane, Tuscaloosa, AL 35401, USA.
Emma K SheriffDepartment of Biological Sciences, University of Alabama, 1325 Hackberry Lane, Tuscaloosa, AL 35401, USA.
Barbaros AslanDepartment of Microbiology, University of Illinois, 601 S. Goodwin Avenue, Urbana, IL 61801, USA.
Asma Hatoum-AslanDepartment of Microbiology, University of Illinois, 601 S. Goodwin Avenue, Urbana, IL 61801, USA.ORCID 0000-0003-2395-8900

Funding

Mechanisms of anti-phage defenses and their mobilization in staphylococciR01AI173022 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Asma HATOUM · 2023 to 2026
$2.0M
Burroughs Wellcome Fund 1020298NIAID NIH HHS R01 AI173022NIH HHS 1R01AI173022U.S. National Science Foundation 2054755
6 · The paper itself

Abstract

Clustered regularly-interspaced short palindromic repeats (CRISPRs) and CRISPR-associated (Cas) proteins protect bacteria and archaea from their viruses, and anti-CRISPRs (Acrs) are small virus-encoded proteins that inhibit CRISPR-Cas immunity. Over 80 families of Acrs have been described to date; however, only three of these subvert Type III CRISPR-Cas immunity. Type III systems employ a complex network of Cas and accessory nucleases to degrade viral nucleic acids. Here, we discover and characterize AcrIIIA1, the first Type III-A specific anti-CRISPR protein. We demonstrate that AcrIIIA1 binds to Csm2 within the Cas10-Csm effector complex and attenuates Cas10's DNase activity and second messenger production. Additionally, AcrIIIA1 associates with fragmented t(m)RNAs (acrIIIA1-RNAs), and we show that they co-purify with the Cas10-Csm complex during phage infection. Although the precise role(s) of acrIIIA1-RNAs remain unclear, we found that they bind stably to RNase R, a host-encoded nuclease known to bolster immunity, and RNase R has the capacity to degrade them. Altogether, our results support a model in which AcrIIIA1 and its associated RNAs target both core Cas and accessory nucleases to provide robust protection against Type III CRISPR-Cas immunity.

Indexed as

CRISPR-Associated ProteinsCRISPR-Cas SystemsBacterial ProteinsBacteriophagesClustered Regularly Interspaced Short Palindromic RepeatsEscherichia coliViral ProteinsBacterial ProteinsCRISPR-Associated ProteinsViral Proteins

Identifiers

PMID39551936
PMCPMC11662646

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.