Evidence map›Paper›PMID 39550762›Full record

ArticlePlant biotechnology journal2025

Increasing thermostability of the key photorespiratory enzyme glycerate 3-kinase by structure-based recombination.

Ludmila V Roze, Anna Antoniak, Daipayan Sarkar, Aaron H Liepman, Mauricio Tejera-Nieves, Josh V Vermaas, Berkley J Walker

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ludmila V RozeDepartment of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0003-0184-0805
Anna AntoniakDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0001-7357-1312
Daipayan SarkarDepartment of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0002-4167-2108
Aaron H LiepmanBiology Department, Eastern Michigan University, Ypsilanti, MI, USA.ORCID https://orcid.org/0000-0002-8148-9359
Mauricio Tejera-NievesDepartment of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0003-1698-0501
Josh V VermaasDepartment of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0003-3139-6469
Berkley J WalkerDepartment of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0001-5932-6468

Funding

National Centre for Supercomputing Applications BIO210061National Science Foundation 2030295National Science Foundation 2030337National Science Foundation 2137603National Science Foundation 2138259National Science Foundation 2138286National Science Foundation 2138296National Science Foundation 2138307U.S. Department of Energy DE-AC02-05CH11231U.S. Department of Energy DE-FG02-91ER20021U.S. Department of Energy DE-SC0018409
6 · The paper itself

Abstract

As global temperatures rise, improving crop yields will require enhancing the thermotolerance of crops. One approach for improving thermotolerance is using bioengineering to increase the thermostability of enzymes catalysing essential biological processes. Photorespiration is an essential recycling process in plants that is integral to photosynthesis and crop growth. The enzymes of photorespiration are targets for enhancing plant thermotolerance as this pathway limits carbon fixation at elevated temperatures. We explored the effects of temperature on the activity of the photorespiratory enzyme glycerate kinase (GLYK) from various organisms and the homologue from the thermophilic alga Cyanidioschyzon merolae was more thermotolerant than those from mesophilic plants, including Arabidopsis thaliana. To understand enzyme features underlying the thermotolerance of C. merolae GLYK (CmGLYK), we performed molecular dynamics simulations using AlphaFold-predicted structures, which revealed greater movement of loop regions of mesophilic plant GLYKs at higher temperatures compared to CmGLYK. Based on these simulations, hybrid proteins were produced and analysed. These hybrid enzymes contained loop regions from CmGLYK replacing the most mobile corresponding loops of AtGLYK. Two of these hybrid enzymes had enhanced thermostability, with melting temperatures increased by 6 °C. One hybrid with three grafted loops maintained higher activity at elevated temperatures. Whilst this hybrid enzyme exhibited enhanced thermostability and a similar K

Indexed as

Glycerol KinaseArabidopsisEnzyme StabilityMolecular Dynamics SimulationPhotosynthesisTemperatureGlycerol Kinaseglycerate 3‐kinasemolecular dynamic simulationphotorespirationstructure‐based recombinationthermostability

Identifiers

PMID39550762
PMCPMC11772331

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.